miRNA display CGI


Results 1 - 20 of 405 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6871 5' -55.8 NC_001875.2 + 6950 0.66 0.871231
Target:  5'- gUGCGugcGCCGCgacaucgccacggcgCGCuGCUUG-ACAGCg -3'
miRNA:   3'- -ACGUuu-CGGCG---------------GCGuCGAACgUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 67579 0.66 0.868951
Target:  5'- gUGCAccuugaugauGAGcCCGUCGguGUgcaccguuuggaacgUGCGCGGCu -3'
miRNA:   3'- -ACGU----------UUC-GGCGGCguCGa--------------ACGUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 40397 0.66 0.868187
Target:  5'- cGCGcccacgcGCCGCCGCucAGCU---ACAGCg -3'
miRNA:   3'- aCGUuu-----CGGCGGCG--UCGAacgUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 43600 0.66 0.868187
Target:  5'- gGCAGcGGCgGCgCGCGccGCUUGCGCcGUu -3'
miRNA:   3'- aCGUU-UCGgCG-GCGU--CGAACGUGuCG- -5'
6871 5' -55.8 NC_001875.2 + 13004 0.66 0.868187
Target:  5'- aUGCAc--UCGUCGUAcGCUUcGCGCGGCa -3'
miRNA:   3'- -ACGUuucGGCGGCGU-CGAA-CGUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 94615 0.66 0.868187
Target:  5'- cGCuGAGCUGCaGCGGCg-GCACAa- -3'
miRNA:   3'- aCGuUUCGGCGgCGUCGaaCGUGUcg -5'
6871 5' -55.8 NC_001875.2 + 102023 0.66 0.868187
Target:  5'- cUGCAGcguGCCguugacccaugcGCCGcCAGCgcccGCACAGUc -3'
miRNA:   3'- -ACGUUu--CGG------------CGGC-GUCGaa--CGUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 58616 0.66 0.868187
Target:  5'- cGCAAAGCCugacgGCCaguGCUgagGCGCuGCa -3'
miRNA:   3'- aCGUUUCGG-----CGGcguCGAa--CGUGuCG- -5'
6871 5' -55.8 NC_001875.2 + 57894 0.66 0.868187
Target:  5'- cGuCGAcGCCGUC-CAGCUUGUACAc- -3'
miRNA:   3'- aC-GUUuCGGCGGcGUCGAACGUGUcg -5'
6871 5' -55.8 NC_001875.2 + 121188 0.66 0.868187
Target:  5'- gUGCAGuccGCCGCCcaaguacuGCAcGC-UGgGCGGCa -3'
miRNA:   3'- -ACGUUu--CGGCGG--------CGU-CGaACgUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 66091 0.66 0.868187
Target:  5'- cGCAcgAAuaCGCCGaGGCccGCGCGGCg -3'
miRNA:   3'- aCGU--UUcgGCGGCgUCGaaCGUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 7294 0.66 0.86588
Target:  5'- aGCGAccccGCCgccgaccccgacucGCCGCAGUUUGUggacguCAGCg -3'
miRNA:   3'- aCGUUu---CGG--------------CGGCGUCGAACGu-----GUCG- -5'
6871 5' -55.8 NC_001875.2 + 6615 0.66 0.860421
Target:  5'- cGC---GCCGCaCGCGGUguacucgUGC-CAGCg -3'
miRNA:   3'- aCGuuuCGGCG-GCGUCGa------ACGuGUCG- -5'
6871 5' -55.8 NC_001875.2 + 96281 0.66 0.860421
Target:  5'- gUGCcccaaAAAGCCGUCGUAgGCggccgggUGgGCGGCc -3'
miRNA:   3'- -ACG-----UUUCGGCGGCGU-CGa------ACgUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 66808 0.66 0.860421
Target:  5'- uUGCGcGuaCGCCgGCAGCgaGUugAGCa -3'
miRNA:   3'- -ACGUuUcgGCGG-CGUCGaaCGugUCG- -5'
6871 5' -55.8 NC_001875.2 + 92033 0.66 0.860421
Target:  5'- uUGCGAAGggccaCGCCGCGGaagacgacguUUUGCAgCGGUg -3'
miRNA:   3'- -ACGUUUCg----GCGGCGUC----------GAACGU-GUCG- -5'
6871 5' -55.8 NC_001875.2 + 30629 0.66 0.860421
Target:  5'- cGCAaccaAAGCCGUCGacaaaCGGCaaGUugGGCg -3'
miRNA:   3'- aCGU----UUCGGCGGC-----GUCGaaCGugUCG- -5'
6871 5' -55.8 NC_001875.2 + 131788 0.66 0.860421
Target:  5'- cGUuc-GCCGCCGCcGCcgaGUugAGCa -3'
miRNA:   3'- aCGuuuCGGCGGCGuCGaa-CGugUCG- -5'
6871 5' -55.8 NC_001875.2 + 87132 0.66 0.860421
Target:  5'- -----cGCUGCCGguGCUcaaguaccgcgUGgGCAGCg -3'
miRNA:   3'- acguuuCGGCGGCguCGA-----------ACgUGUCG- -5'
6871 5' -55.8 NC_001875.2 + 88528 0.66 0.859632
Target:  5'- gGCAcgcCCGCCGCGGCgucGUuuauuaacuuguuGCGGCg -3'
miRNA:   3'- aCGUuucGGCGGCGUCGaa-CG-------------UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.