miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6872 3' -48.1 NC_001875.2 + 9085 0.66 0.99928
Target:  5'- uGCG-CCUGUgGCGAgu---CGGCGCUa -3'
miRNA:   3'- -CGCaGGACAgUGCUauucuGUUGUGA- -5'
6872 3' -48.1 NC_001875.2 + 121937 0.66 0.99891
Target:  5'- cGCG-CCaGUCGCGAgUAAcGugAGCGCa -3'
miRNA:   3'- -CGCaGGaCAGUGCU-AUU-CugUUGUGa -5'
6872 3' -48.1 NC_001875.2 + 19777 0.66 0.99891
Target:  5'- uGCGcaCCUG-CugGA--AGACGACGCg -3'
miRNA:   3'- -CGCa-GGACaGugCUauUCUGUUGUGa -5'
6872 3' -48.1 NC_001875.2 + 91662 0.66 0.998671
Target:  5'- aGCGgguUCCaGUaCACGAUGGuGGCGGCGCc -3'
miRNA:   3'- -CGC---AGGaCA-GUGCUAUU-CUGUUGUGa -5'
6872 3' -48.1 NC_001875.2 + 130915 0.66 0.998671
Target:  5'- cCGUCCgGUCACGGcaguGGCGGCGg- -3'
miRNA:   3'- cGCAGGaCAGUGCUauu-CUGUUGUga -5'
6872 3' -48.1 NC_001875.2 + 81641 0.67 0.9967
Target:  5'- gGCGcUgCUG-CGCGAUuucGACAACACg -3'
miRNA:   3'- -CGC-AgGACaGUGCUAuu-CUGUUGUGa -5'
6872 3' -48.1 NC_001875.2 + 68125 0.69 0.992769
Target:  5'- cGCGUCCaGUUcCGGcGAGGCAAuCACg -3'
miRNA:   3'- -CGCAGGaCAGuGCUaUUCUGUU-GUGa -5'
6872 3' -48.1 NC_001875.2 + 6295 0.7 0.983503
Target:  5'- uGCGUCCaaUGcaccgcaacaagCAUGGUGGGGCAGCGCc -3'
miRNA:   3'- -CGCAGG--ACa-----------GUGCUAUUCUGUUGUGa -5'
6872 3' -48.1 NC_001875.2 + 100145 0.7 0.981844
Target:  5'- uGUGUCugccgCUGUCGCGGUGaucacGGugGGCGCg -3'
miRNA:   3'- -CGCAG-----GACAGUGCUAU-----UCugUUGUGa -5'
6872 3' -48.1 NC_001875.2 + 38771 0.71 0.973655
Target:  5'- gGCGUCCUGUUggGcgGAGAgcgcgcccgcaauuCGGCGCUg -3'
miRNA:   3'- -CGCAGGACAGugCuaUUCU--------------GUUGUGA- -5'
6872 3' -48.1 NC_001875.2 + 49997 0.71 0.97162
Target:  5'- cGCGgcgCUUGUCGCGGUuGGGGC-GCGCg -3'
miRNA:   3'- -CGCa--GGACAGUGCUA-UUCUGuUGUGa -5'
6872 3' -48.1 NC_001875.2 + 3395 0.72 0.95372
Target:  5'- cGCGUCCUGUUcCGAUAAGGaguUGCg -3'
miRNA:   3'- -CGCAGGACAGuGCUAUUCUguuGUGa -5'
6872 3' -48.1 NC_001875.2 + 128348 0.74 0.905177
Target:  5'- cGCGUCCUGUCACG-UAcGAau-CACa -3'
miRNA:   3'- -CGCAGGACAGUGCuAUuCUguuGUGa -5'
6872 3' -48.1 NC_001875.2 + 3350 0.82 0.535526
Target:  5'- cGUGUCCgGUCACGcgcAUGAGAUAACGCg -3'
miRNA:   3'- -CGCAGGaCAGUGC---UAUUCUGUUGUGa -5'
6872 3' -48.1 NC_001875.2 + 3451 1.1 0.012936
Target:  5'- gGCGUCCUGUCACGAUAAGACAACACUc -3'
miRNA:   3'- -CGCAGGACAGUGCUAUUCUGUUGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.