miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6873 5' -59 NC_001875.2 + 22690 0.66 0.783737
Target:  5'- aCGCaucaugCAUCgGCUCGCCCuAGUcgUCGCc -3'
miRNA:   3'- -GCGca----GUAGgCGAGCGGG-UCG--AGUGc -5'
6873 5' -59 NC_001875.2 + 124727 0.66 0.783737
Target:  5'- aCGCGUCGgccguuucgCCGC-CGUCgAGC-CGCGc -3'
miRNA:   3'- -GCGCAGUa--------GGCGaGCGGgUCGaGUGC- -5'
6873 5' -59 NC_001875.2 + 23804 0.66 0.783737
Target:  5'- aCGUGUCGcUCCGCggCGUCgGGCgCGCc -3'
miRNA:   3'- -GCGCAGU-AGGCGa-GCGGgUCGaGUGc -5'
6873 5' -59 NC_001875.2 + 76520 0.66 0.765343
Target:  5'- gCGCGUCAUCaccguCGCgCGCCaCuGC-CGCGa -3'
miRNA:   3'- -GCGCAGUAG-----GCGaGCGG-GuCGaGUGC- -5'
6873 5' -59 NC_001875.2 + 63100 0.66 0.759733
Target:  5'- gCGUGUCGagcaaCCGCUCGUCCaugggauagcggccgGGCgCGCGg -3'
miRNA:   3'- -GCGCAGUa----GGCGAGCGGG---------------UCGaGUGC- -5'
6873 5' -59 NC_001875.2 + 41345 0.66 0.75597
Target:  5'- gGCGUCAaagccCUGUUUGCCUacccguGGCUCAUGc -3'
miRNA:   3'- gCGCAGUa----GGCGAGCGGG------UCGAGUGC- -5'
6873 5' -59 NC_001875.2 + 74534 0.66 0.746491
Target:  5'- uGCGUCG-CCGaCgacgcgCGCCC-GUUCGCGu -3'
miRNA:   3'- gCGCAGUaGGC-Ga-----GCGGGuCGAGUGC- -5'
6873 5' -59 NC_001875.2 + 124975 0.66 0.746491
Target:  5'- cCGCGUCG-CCGCgCGUCC-GCUuUACGu -3'
miRNA:   3'- -GCGCAGUaGGCGaGCGGGuCGA-GUGC- -5'
6873 5' -59 NC_001875.2 + 71994 0.66 0.746491
Target:  5'- aCGCGUCG-CUGUagUCGCCgCGGCUUuuacccaaGCGg -3'
miRNA:   3'- -GCGCAGUaGGCG--AGCGG-GUCGAG--------UGC- -5'
6873 5' -59 NC_001875.2 + 125111 0.67 0.727251
Target:  5'- gCGCGUgAUgCgGUuuaugUCGCCCGcGCUCACa -3'
miRNA:   3'- -GCGCAgUA-GgCG-----AGCGGGU-CGAGUGc -5'
6873 5' -59 NC_001875.2 + 42661 0.67 0.727251
Target:  5'- cCGCGUCGaggCUGaUUUGCgCCAGCgugCACGa -3'
miRNA:   3'- -GCGCAGUa--GGC-GAGCG-GGUCGa--GUGC- -5'
6873 5' -59 NC_001875.2 + 117286 0.67 0.727251
Target:  5'- gCGCuUCAcgauggCCGCgUGCgCCAGCUCACu -3'
miRNA:   3'- -GCGcAGUa-----GGCGaGCG-GGUCGAGUGc -5'
6873 5' -59 NC_001875.2 + 60706 0.67 0.717506
Target:  5'- aCGCGg---CCGCgcugaggcCGCCCAGC-CACa -3'
miRNA:   3'- -GCGCaguaGGCGa-------GCGGGUCGaGUGc -5'
6873 5' -59 NC_001875.2 + 6376 0.67 0.717506
Target:  5'- uCGuCGUCGggcaCCGCgcgGCCCGGCaCGCGg -3'
miRNA:   3'- -GC-GCAGUa---GGCGag-CGGGUCGaGUGC- -5'
6873 5' -59 NC_001875.2 + 57630 0.67 0.707692
Target:  5'- uGCGcCAaaCGCcCGCCCAGUUgCGCGu -3'
miRNA:   3'- gCGCaGUagGCGaGCGGGUCGA-GUGC- -5'
6873 5' -59 NC_001875.2 + 27343 0.67 0.707692
Target:  5'- gGCGUUucgCCgGCUCGCaucaugCGGCUCACc -3'
miRNA:   3'- gCGCAGua-GG-CGAGCGg-----GUCGAGUGc -5'
6873 5' -59 NC_001875.2 + 108245 0.67 0.697815
Target:  5'- gCGCGUCAacgggCUGCUgGCCaAGCaCGCGg -3'
miRNA:   3'- -GCGCAGUa----GGCGAgCGGgUCGaGUGC- -5'
6873 5' -59 NC_001875.2 + 42498 0.67 0.697815
Target:  5'- aCGcCGUCGUCCGCgugCGCCgcaaAGCUgAgGc -3'
miRNA:   3'- -GC-GCAGUAGGCGa--GCGGg---UCGAgUgC- -5'
6873 5' -59 NC_001875.2 + 9712 0.67 0.697815
Target:  5'- gCGCGcCggCCGCgccgCGCCCgaAGCguggCACGu -3'
miRNA:   3'- -GCGCaGuaGGCGa---GCGGG--UCGa---GUGC- -5'
6873 5' -59 NC_001875.2 + 6943 0.67 0.696824
Target:  5'- aCGCGUCGUgcgugcgCCGCgacaUCGCCaCGGCgCGCu -3'
miRNA:   3'- -GCGCAGUA-------GGCG----AGCGG-GUCGaGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.