miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6874 5' -63.4 NC_001875.2 + 97741 0.66 0.579072
Target:  5'- gCGCGCGC-GCUCGugcaaccCCGGCaCGGgCg -3'
miRNA:   3'- gGCGCGCGuCGAGCc------GGUCGaGCCgG- -5'
6874 5' -63.4 NC_001875.2 + 89809 0.66 0.579072
Target:  5'- gCGCGgGCGGCagaUCGugguGCCGGUUaacgGGCCc -3'
miRNA:   3'- gGCGCgCGUCG---AGC----CGGUCGAg---CCGG- -5'
6874 5' -63.4 NC_001875.2 + 100821 0.66 0.579072
Target:  5'- -gGCGCGCGaUUCGauuGCCAagUCGGCCg -3'
miRNA:   3'- ggCGCGCGUcGAGC---CGGUcgAGCCGG- -5'
6874 5' -63.4 NC_001875.2 + 73619 0.66 0.579072
Target:  5'- gCgGCG-GCGGCUgCGG-CGGCUgCGGCg -3'
miRNA:   3'- -GgCGCgCGUCGA-GCCgGUCGA-GCCGg -5'
6874 5' -63.4 NC_001875.2 + 32581 0.66 0.579072
Target:  5'- gCCGCGCGCAcCUCGaCUAGCcgUGGg- -3'
miRNA:   3'- -GGCGCGCGUcGAGCcGGUCGa-GCCgg -5'
6874 5' -63.4 NC_001875.2 + 85674 0.66 0.579072
Target:  5'- gCGCGCcggccuGCAGCgacUCGaCCAGCUUGcgcGCCg -3'
miRNA:   3'- gGCGCG------CGUCG---AGCcGGUCGAGC---CGG- -5'
6874 5' -63.4 NC_001875.2 + 92943 0.66 0.579072
Target:  5'- gCGUaGCGCuugucguaAGCUUGGCCuGCUaUGGCg -3'
miRNA:   3'- gGCG-CGCG--------UCGAGCCGGuCGA-GCCGg -5'
6874 5' -63.4 NC_001875.2 + 47630 0.66 0.570367
Target:  5'- gCGCGCGCGGCccuacuacCGGCagcuguuGCgcaaacgcacggacgCGGCCg -3'
miRNA:   3'- gGCGCGCGUCGa-------GCCGgu-----CGa--------------GCCGG- -5'
6874 5' -63.4 NC_001875.2 + 886 0.66 0.569402
Target:  5'- uUGgGCGCgAGaaCGGCgCAG-UCGGCCa -3'
miRNA:   3'- gGCgCGCG-UCgaGCCG-GUCgAGCCGG- -5'
6874 5' -63.4 NC_001875.2 + 108228 0.66 0.569402
Target:  5'- aCCaCGgGCAauucuggCGGCCGGCUgGGCUg -3'
miRNA:   3'- -GGcGCgCGUcga----GCCGGUCGAgCCGG- -5'
6874 5' -63.4 NC_001875.2 + 55706 0.66 0.569402
Target:  5'- aCGCGgGCcuCUaCGGCCGcGCaaauaCGGCCg -3'
miRNA:   3'- gGCGCgCGucGA-GCCGGU-CGa----GCCGG- -5'
6874 5' -63.4 NC_001875.2 + 46636 0.66 0.569402
Target:  5'- aCCGCGCgGCGGC-CcGUCGGCUCauCCa -3'
miRNA:   3'- -GGCGCG-CGUCGaGcCGGUCGAGccGG- -5'
6874 5' -63.4 NC_001875.2 + 65461 0.66 0.569402
Target:  5'- --uUGCGCAGCU-GGCCacgcagcaaGGCaagCGGCCc -3'
miRNA:   3'- ggcGCGCGUCGAgCCGG---------UCGa--GCCGG- -5'
6874 5' -63.4 NC_001875.2 + 19897 0.66 0.569402
Target:  5'- aCGCGUGCGcuuuuagcuGCUCGuacGgCAGCUgcacCGGCCc -3'
miRNA:   3'- gGCGCGCGU---------CGAGC---CgGUCGA----GCCGG- -5'
6874 5' -63.4 NC_001875.2 + 120674 0.66 0.569402
Target:  5'- aCgGCGCGCuGCUgUGcGCCAuCgacCGGCCg -3'
miRNA:   3'- -GgCGCGCGuCGA-GC-CGGUcGa--GCCGG- -5'
6874 5' -63.4 NC_001875.2 + 121543 0.66 0.569402
Target:  5'- aCCaGCGCGUAG-UCGGCaaaGGcCUCGaCCa -3'
miRNA:   3'- -GG-CGCGCGUCgAGCCGg--UC-GAGCcGG- -5'
6874 5' -63.4 NC_001875.2 + 53992 0.66 0.569402
Target:  5'- uUGC-CGCAGCU-GGUCGcGCaCGGCCu -3'
miRNA:   3'- gGCGcGCGUCGAgCCGGU-CGaGCCGG- -5'
6874 5' -63.4 NC_001875.2 + 36324 0.66 0.566509
Target:  5'- cCCGCGCuGgGGCUguugcgcguguacgCGGCCGGC--GGCg -3'
miRNA:   3'- -GGCGCG-CgUCGA--------------GCCGGUCGagCCGg -5'
6874 5' -63.4 NC_001875.2 + 49613 0.66 0.559772
Target:  5'- gCGCGCaaGCGGCUuccUGGacuuCCAGCggcgacacgagCGGCCg -3'
miRNA:   3'- gGCGCG--CGUCGA---GCC----GGUCGa----------GCCGG- -5'
6874 5' -63.4 NC_001875.2 + 42117 0.66 0.559772
Target:  5'- gCCG-GCGCAGUccgcugaucUCGauGCUAGCaauggacgcgUCGGCCg -3'
miRNA:   3'- -GGCgCGCGUCG---------AGC--CGGUCG----------AGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.