miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6875 3' -62 NC_001875.2 + 45247 0.66 0.639715
Target:  5'- cGUCGCC-UUGUCGUacaccaGCUGGAUGGCg -3'
miRNA:   3'- -CGGCGGuGACGGCAc-----UGGCCUGCCGa -5'
6875 3' -62 NC_001875.2 + 65744 0.66 0.639715
Target:  5'- cCCGCCGCgcggGCCucggcguauucGUGcgcGgCGGGCGGCg -3'
miRNA:   3'- cGGCGGUGa---CGG-----------CAC---UgGCCUGCCGa -5'
6875 3' -62 NC_001875.2 + 18141 0.66 0.639715
Target:  5'- -aCGCCACUGUgaGUuACUGGuGCGGCg -3'
miRNA:   3'- cgGCGGUGACGg-CAcUGGCC-UGCCGa -5'
6875 3' -62 NC_001875.2 + 35530 0.66 0.629831
Target:  5'- cGCgGCCACggugcugGCCGcccacccGGCCGccuacGACGGCUu -3'
miRNA:   3'- -CGgCGGUGa------CGGCa------CUGGC-----CUGCCGA- -5'
6875 3' -62 NC_001875.2 + 37097 0.66 0.629831
Target:  5'- aCCGCCGCguggGUGugCGGgcGCGGCg -3'
miRNA:   3'- cGGCGGUGacggCACugGCC--UGCCGa -5'
6875 3' -62 NC_001875.2 + 33457 0.66 0.629831
Target:  5'- uCCGCCACcucGUCGUGGuCgGGGCGcGCc -3'
miRNA:   3'- cGGCGGUGa--CGGCACU-GgCCUGC-CGa -5'
6875 3' -62 NC_001875.2 + 87853 0.66 0.629831
Target:  5'- cCCGUCggGCUGuCCGUGG-CGGuCGGCg -3'
miRNA:   3'- cGGCGG--UGAC-GGCACUgGCCuGCCGa -5'
6875 3' -62 NC_001875.2 + 58226 0.66 0.619948
Target:  5'- aGCCGCCGCaGCCGccGCCGcaacaguUGGCg -3'
miRNA:   3'- -CGGCGGUGaCGGCacUGGCcu-----GCCGa -5'
6875 3' -62 NC_001875.2 + 51923 0.66 0.610074
Target:  5'- uGCCGCCGCUGCacaGcGugCGG-C-GCUa -3'
miRNA:   3'- -CGGCGGUGACGg--CaCugGCCuGcCGA- -5'
6875 3' -62 NC_001875.2 + 28819 0.66 0.600215
Target:  5'- aGCgaGCCGgUGaCCGUcaggguggccGACaCGGACGGCg -3'
miRNA:   3'- -CGg-CGGUgAC-GGCA----------CUG-GCCUGCCGa -5'
6875 3' -62 NC_001875.2 + 36405 0.66 0.600215
Target:  5'- uGCCaGCCGC-GCaCGcUGGCCGGcgccGCGGUg -3'
miRNA:   3'- -CGG-CGGUGaCG-GC-ACUGGCC----UGCCGa -5'
6875 3' -62 NC_001875.2 + 45714 0.66 0.589397
Target:  5'- cGCCGCgCACUGCCGaUGGCCacguccacGcgaagccguaaacGCGGCg -3'
miRNA:   3'- -CGGCG-GUGACGGC-ACUGGc-------C-------------UGCCGa -5'
6875 3' -62 NC_001875.2 + 18064 0.67 0.580571
Target:  5'- uGCCGCCGCUucgGgCGcGACCucauuaacGGCGGCUg -3'
miRNA:   3'- -CGGCGGUGA---CgGCaCUGGc-------CUGCCGA- -5'
6875 3' -62 NC_001875.2 + 120748 0.67 0.580571
Target:  5'- cGCCGagACgggGCCGUGuCCaGGGCGcGCg -3'
miRNA:   3'- -CGGCggUGa--CGGCACuGG-CCUGC-CGa -5'
6875 3' -62 NC_001875.2 + 77836 0.67 0.570797
Target:  5'- cGCgCGCCGCaagGCCGUgcgcGACCaGcuGCGGCa -3'
miRNA:   3'- -CG-GCGGUGa--CGGCA----CUGGcC--UGCCGa -5'
6875 3' -62 NC_001875.2 + 35497 0.67 0.570797
Target:  5'- aGCgGCaugacaACUGCCGgcaaCGGGCGGCc -3'
miRNA:   3'- -CGgCGg-----UGACGGCacugGCCUGCCGa -5'
6875 3' -62 NC_001875.2 + 100035 0.67 0.570797
Target:  5'- cGCuUGCCGCguucGUCGUG-CCGGACGcGUa -3'
miRNA:   3'- -CG-GCGGUGa---CGGCACuGGCCUGC-CGa -5'
6875 3' -62 NC_001875.2 + 1741 0.67 0.570797
Target:  5'- cGCCGCCGCcGCCGccauuuCCGu-CGGCg -3'
miRNA:   3'- -CGGCGGUGaCGGCacu---GGCcuGCCGa -5'
6875 3' -62 NC_001875.2 + 1789 0.67 0.570797
Target:  5'- cGCCGCCGCcGCCGccauuuCCGu-CGGCg -3'
miRNA:   3'- -CGGCGGUGaCGGCacu---GGCcuGCCGa -5'
6875 3' -62 NC_001875.2 + 17750 0.67 0.561064
Target:  5'- cGUCGCCA-UGCCGcuugugGACaCGG-CGGCg -3'
miRNA:   3'- -CGGCGGUgACGGCa-----CUG-GCCuGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.