miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6875 5' -54.5 NC_001875.2 + 4283 0.66 0.935017
Target:  5'- gUGcAGCAgcgcGCCGaUCaaGCACGCGGUc- -3'
miRNA:   3'- -AC-UCGU----UGGCaAGaaCGUGCGCCGcu -5'
6875 5' -54.5 NC_001875.2 + 101980 0.66 0.935017
Target:  5'- cGAcGCAGgCGUUgugcaUUGCggcguGCGCGGCGGc -3'
miRNA:   3'- aCU-CGUUgGCAAg----AACG-----UGCGCCGCU- -5'
6875 5' -54.5 NC_001875.2 + 122957 0.66 0.929835
Target:  5'- gGAGCGgcaauauuccACCGagaUUUGCAcCGUGGCGGc -3'
miRNA:   3'- aCUCGU----------UGGCaa-GAACGU-GCGCCGCU- -5'
6875 5' -54.5 NC_001875.2 + 97756 0.66 0.929835
Target:  5'- gGGGUGAUCGacaa-GCGCGUGGCGGc -3'
miRNA:   3'- aCUCGUUGGCaagaaCGUGCGCCGCU- -5'
6875 5' -54.5 NC_001875.2 + 41811 0.66 0.929835
Target:  5'- --uGCAACaug----GCGCGCGGCGAg -3'
miRNA:   3'- acuCGUUGgcaagaaCGUGCGCCGCU- -5'
6875 5' -54.5 NC_001875.2 + 114789 0.66 0.929835
Target:  5'- cGGGCAGCUGcUCgcguUGuUGCGCGGCu- -3'
miRNA:   3'- aCUCGUUGGCaAGa---AC-GUGCGCCGcu -5'
6875 5' -54.5 NC_001875.2 + 13535 0.66 0.924401
Target:  5'- --uGCAGCCGUUgUUGCAaGCGcGCc- -3'
miRNA:   3'- acuCGUUGGCAAgAACGUgCGC-CGcu -5'
6875 5' -54.5 NC_001875.2 + 9697 0.66 0.924401
Target:  5'- gGGGCucGCCGUcg-UGCGCGcCGGCc- -3'
miRNA:   3'- aCUCGu-UGGCAagaACGUGC-GCCGcu -5'
6875 5' -54.5 NC_001875.2 + 23415 0.66 0.924401
Target:  5'- aGAGCAGCUGUUggaacgUGgACaGCGGCa- -3'
miRNA:   3'- aCUCGUUGGCAAga----ACgUG-CGCCGcu -5'
6875 5' -54.5 NC_001875.2 + 36067 0.66 0.922723
Target:  5'- uUGcGCAACgGUUCcUGCaacaagacgcgcucGCGCGGCa- -3'
miRNA:   3'- -ACuCGUUGgCAAGaACG--------------UGCGCCGcu -5'
6875 5' -54.5 NC_001875.2 + 31676 0.66 0.921021
Target:  5'- cUGGGCcagcgugccggcgugGACCGccgCUUGCGCGCcgccGGCGc -3'
miRNA:   3'- -ACUCG---------------UUGGCaa-GAACGUGCG----CCGCu -5'
6875 5' -54.5 NC_001875.2 + 12428 0.66 0.918718
Target:  5'- -aAGCAGgCCGUUgcgUGCGCGCcGCGGu -3'
miRNA:   3'- acUCGUU-GGCAAga-ACGUGCGcCGCU- -5'
6875 5' -54.5 NC_001875.2 + 115790 0.66 0.918718
Target:  5'- cGAGCAauucgucccaGCUGcgUCgaaacgUGUugGUGGCGAc -3'
miRNA:   3'- aCUCGU----------UGGCa-AGa-----ACGugCGCCGCU- -5'
6875 5' -54.5 NC_001875.2 + 91585 0.66 0.918718
Target:  5'- --cGCGACCGUuuucagcguuUCUUGCACaccCGGCu- -3'
miRNA:   3'- acuCGUUGGCA----------AGAACGUGc--GCCGcu -5'
6875 5' -54.5 NC_001875.2 + 6936 0.66 0.918718
Target:  5'- gUGAGCAACgCGUcg-UGCguGCGCcGCGAc -3'
miRNA:   3'- -ACUCGUUG-GCAagaACG--UGCGcCGCU- -5'
6875 5' -54.5 NC_001875.2 + 117379 0.66 0.918718
Target:  5'- gGAGgcGCCGagCUUGCugGCcGCGGg -3'
miRNA:   3'- aCUCguUGGCaaGAACGugCGcCGCU- -5'
6875 5' -54.5 NC_001875.2 + 74137 0.66 0.918718
Target:  5'- aGAGCuggaGUUCgaGgGCGCGGCGc -3'
miRNA:   3'- aCUCGuuggCAAGaaCgUGCGCCGCu -5'
6875 5' -54.5 NC_001875.2 + 100540 0.66 0.918718
Target:  5'- -cAGCGACagGUUgUUGUAUGUGGCGc -3'
miRNA:   3'- acUCGUUGg-CAAgAACGUGCGCCGCu -5'
6875 5' -54.5 NC_001875.2 + 127395 0.66 0.918718
Target:  5'- aGAGCcuGGCCaaag-UGCugGCGGCGc -3'
miRNA:   3'- aCUCG--UUGGcaagaACGugCGCCGCu -5'
6875 5' -54.5 NC_001875.2 + 800 0.66 0.916964
Target:  5'- -cGGCAAUUGUUuugcgcagaaacagCUUGCugGUGGUGGg -3'
miRNA:   3'- acUCGUUGGCAA--------------GAACGugCGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.