miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6876 5' -53.5 NC_001875.2 + 7384 0.66 0.94618
Target:  5'- aUCGGCCAcGCGguu-GCgCGACGCg- -3'
miRNA:   3'- gAGCCGGU-CGCaacuUGaGUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 27173 0.66 0.94618
Target:  5'- -aUGGCCAagGgcGAGCUCAACGCc- -3'
miRNA:   3'- gaGCCGGUcgCaaCUUGAGUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 37977 0.66 0.94618
Target:  5'- -gCGGCCuGCGc---GCUCAGCGCc- -3'
miRNA:   3'- gaGCCGGuCGCaacuUGAGUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 10458 0.66 0.945723
Target:  5'- -gCGGCgCGGCGgcGcGCUCAgugaaugGCGCUUg -3'
miRNA:   3'- gaGCCG-GUCGCaaCuUGAGU-------UGCGAA- -5'
6876 5' -53.5 NC_001875.2 + 100512 0.66 0.941499
Target:  5'- gUCGGgCugcGCGUUGAACUCGAacacagaugcguCGCa- -3'
miRNA:   3'- gAGCCgGu--CGCAACUUGAGUU------------GCGaa -5'
6876 5' -53.5 NC_001875.2 + 66152 0.66 0.934517
Target:  5'- gUCGGCCGGCGUgaucgugcugaucGGGCUgGucGCGUUUg -3'
miRNA:   3'- gAGCCGGUCGCAa------------CUUGAgU--UGCGAA- -5'
6876 5' -53.5 NC_001875.2 + 71926 0.66 0.931369
Target:  5'- gUCGGCgAGCGccUUGAccgcgcGCUCcGCGCg- -3'
miRNA:   3'- gAGCCGgUCGC--AACU------UGAGuUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 94268 0.66 0.925916
Target:  5'- gCUCGcGCCGGCGcauccACUCGAUGCc- -3'
miRNA:   3'- -GAGC-CGGUCGCaacu-UGAGUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 45426 0.67 0.922521
Target:  5'- -aCGuGCCGcgcagguuguuuugcGCGUcGAACUCGGCGCUc -3'
miRNA:   3'- gaGC-CGGU---------------CGCAaCUUGAGUUGCGAa -5'
6876 5' -53.5 NC_001875.2 + 110172 0.67 0.920205
Target:  5'- gUCGGgCGGCGUcgcacUGcGCUCGuccGCGCUg -3'
miRNA:   3'- gAGCCgGUCGCA-----ACuUGAGU---UGCGAa -5'
6876 5' -53.5 NC_001875.2 + 131750 0.67 0.908008
Target:  5'- uUgGGCCGGCGgcGGAUcgggCGGCGCg- -3'
miRNA:   3'- gAgCCGGUCGCaaCUUGa---GUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 6921 0.67 0.894792
Target:  5'- gCUCGGCCgagGGCG-UGGAC-CGcGCGCUa -3'
miRNA:   3'- -GAGCCGG---UCGCaACUUGaGU-UGCGAa -5'
6876 5' -53.5 NC_001875.2 + 1045 0.68 0.88781
Target:  5'- --aGGCgcaCAGCGUUGGGCgCAACGUUg -3'
miRNA:   3'- gagCCG---GUCGCAACUUGaGUUGCGAa -5'
6876 5' -53.5 NC_001875.2 + 125750 0.68 0.880583
Target:  5'- gUUGGCCAGCGUUuuccaCAGCGCa- -3'
miRNA:   3'- gAGCCGGUCGCAAcuugaGUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 14463 0.68 0.865417
Target:  5'- -gCGGCCAGCa---AGCUCGGCGCc- -3'
miRNA:   3'- gaGCCGGUCGcaacUUGAGUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 31992 0.68 0.85749
Target:  5'- -aCGGCCGGUuugUGAGCggcggCGACGCa- -3'
miRNA:   3'- gaGCCGGUCGca-ACUUGa----GUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 37500 0.68 0.849342
Target:  5'- uUCGGCCGGCGacgGuGCggaCGACGCg- -3'
miRNA:   3'- gAGCCGGUCGCaa-CuUGa--GUUGCGaa -5'
6876 5' -53.5 NC_001875.2 + 125341 0.68 0.849342
Target:  5'- -gCGGCCAGCGUguUGGcgcggcACUCcGCGUUg -3'
miRNA:   3'- gaGCCGGUCGCA--ACU------UGAGuUGCGAa -5'
6876 5' -53.5 NC_001875.2 + 35736 0.68 0.849342
Target:  5'- gCUCGGCC-GCGUcGGucaGCUC-GCGCUUc -3'
miRNA:   3'- -GAGCCGGuCGCAaCU---UGAGuUGCGAA- -5'
6876 5' -53.5 NC_001875.2 + 12968 0.69 0.840981
Target:  5'- -gCGGCgGGCG-UGGGCUCcGCGCc- -3'
miRNA:   3'- gaGCCGgUCGCaACUUGAGuUGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.