miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6877 3' -56.4 NC_001875.2 + 18167 0.66 0.881913
Target:  5'- --gCGCGCgacgCCGC-CAcuguGGCGG-UGCCg -3'
miRNA:   3'- cagGCGCGa---GGCGaGU----UUGCCuACGG- -5'
6877 3' -56.4 NC_001875.2 + 53536 0.66 0.881913
Target:  5'- cGUCgUGCGCUaCCaGCgcgagccgCAAACGGGcuuggUGCCg -3'
miRNA:   3'- -CAG-GCGCGA-GG-CGa-------GUUUGCCU-----ACGG- -5'
6877 3' -56.4 NC_001875.2 + 7251 0.66 0.874751
Target:  5'- uUCCGCGCUgCaGCggccuggcGCGGGUcGCCg -3'
miRNA:   3'- cAGGCGCGAgG-CGaguu----UGCCUA-CGG- -5'
6877 3' -56.4 NC_001875.2 + 109402 0.66 0.874751
Target:  5'- -aCCGCGC-CaCGCcCGAaauggagcaACGGAUGCa -3'
miRNA:   3'- caGGCGCGaG-GCGaGUU---------UGCCUACGg -5'
6877 3' -56.4 NC_001875.2 + 29417 0.66 0.874751
Target:  5'- -cCCgGCGCUCgGCaacggCGAGCGcGAcGCCg -3'
miRNA:   3'- caGG-CGCGAGgCGa----GUUUGC-CUaCGG- -5'
6877 3' -56.4 NC_001875.2 + 38662 0.66 0.873292
Target:  5'- -aCCGCGUgCUGCUCAuguccaucaaguGCGGcgGCg -3'
miRNA:   3'- caGGCGCGaGGCGAGUu-----------UGCCuaCGg -5'
6877 3' -56.4 NC_001875.2 + 42961 0.66 0.872559
Target:  5'- -cCCGCGCagCGCgcCAAcaaugcuuugaaagGCGGcgGCCg -3'
miRNA:   3'- caGGCGCGagGCGa-GUU--------------UGCCuaCGG- -5'
6877 3' -56.4 NC_001875.2 + 23630 0.66 0.86737
Target:  5'- -cCCGUGgUCuUGCU-GAGCGGGUGCUc -3'
miRNA:   3'- caGGCGCgAG-GCGAgUUUGCCUACGG- -5'
6877 3' -56.4 NC_001875.2 + 93953 0.66 0.859775
Target:  5'- -gCCGCGCcagcaagCCGCUgGcGCGGcccGCCg -3'
miRNA:   3'- caGGCGCGa------GGCGAgUuUGCCua-CGG- -5'
6877 3' -56.4 NC_001875.2 + 42505 0.66 0.859775
Target:  5'- cGUCCGCGUgcgCCGCa-AAGCuGAgGCCc -3'
miRNA:   3'- -CAGGCGCGa--GGCGagUUUGcCUaCGG- -5'
6877 3' -56.4 NC_001875.2 + 36091 0.67 0.843969
Target:  5'- --aCGCGCUCgCGCggcagCAcGCGGcgGCg -3'
miRNA:   3'- cagGCGCGAG-GCGa----GUuUGCCuaCGg -5'
6877 3' -56.4 NC_001875.2 + 88816 0.67 0.843969
Target:  5'- -cCCGCGC-CCGCggcgcgcggcacUCGcAAUGGAgGCCa -3'
miRNA:   3'- caGGCGCGaGGCG------------AGU-UUGCCUaCGG- -5'
6877 3' -56.4 NC_001875.2 + 61520 0.67 0.843969
Target:  5'- aGUCCGCguGCUCgCGCU----UGGcgGCCa -3'
miRNA:   3'- -CAGGCG--CGAG-GCGAguuuGCCuaCGG- -5'
6877 3' -56.4 NC_001875.2 + 31927 0.67 0.842345
Target:  5'- -aCCGCGCgcgggcCCGCUCGuugcgcucgaGGcUGCCg -3'
miRNA:   3'- caGGCGCGa-----GGCGAGUuug-------CCuACGG- -5'
6877 3' -56.4 NC_001875.2 + 121407 0.67 0.839073
Target:  5'- cGUCaaaGCuGCUgCGC-CAAauguuggguagugcaGCGGGUGCCg -3'
miRNA:   3'- -CAGg--CG-CGAgGCGaGUU---------------UGCCUACGG- -5'
6877 3' -56.4 NC_001875.2 + 85255 0.67 0.835771
Target:  5'- uUCCGCGCUCgGCgCGGACacGAgcGCCc -3'
miRNA:   3'- cAGGCGCGAGgCGaGUUUGc-CUa-CGG- -5'
6877 3' -56.4 NC_001875.2 + 17823 0.67 0.827387
Target:  5'- -aCCGCGCggCCGC-CAuGCGcGAgggcGCCg -3'
miRNA:   3'- caGGCGCGa-GGCGaGUuUGC-CUa---CGG- -5'
6877 3' -56.4 NC_001875.2 + 45457 0.67 0.827387
Target:  5'- cUCgGCGCUCgGCgcccgCAgccgcgcgucuAGCGcGGUGCCa -3'
miRNA:   3'- cAGgCGCGAGgCGa----GU-----------UUGC-CUACGG- -5'
6877 3' -56.4 NC_001875.2 + 100897 0.67 0.818823
Target:  5'- gGUCCGgGCgCCGCagCGcGCGGAgacgcgucGCCg -3'
miRNA:   3'- -CAGGCgCGaGGCGa-GUuUGCCUa-------CGG- -5'
6877 3' -56.4 NC_001875.2 + 87713 0.67 0.818823
Target:  5'- ---aGCGCUCCGCggacgCAAaccGCGGAcaacucGCCg -3'
miRNA:   3'- caggCGCGAGGCGa----GUU---UGCCUa-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.