miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6877 5' -52.4 NC_001875.2 + 110910 0.66 0.96364
Target:  5'- -cGGGcGUUUGagcuGGCcaUGGCGCGCCc -3'
miRNA:   3'- aaUCCuCAAACau--CCG--AUCGUGCGGc -5'
6877 5' -52.4 NC_001875.2 + 113440 0.66 0.960363
Target:  5'- aUGGGAGUUuugGUGaagcccguuucggcGGUguacgacaauugcauUAGCACGCCGu -3'
miRNA:   3'- aAUCCUCAAa--CAU--------------CCG---------------AUCGUGCGGC- -5'
6877 5' -52.4 NC_001875.2 + 52184 0.66 0.959987
Target:  5'- uUUGGGcacGGUcaacUUGcUGGGCgacuGCGCGCCGu -3'
miRNA:   3'- -AAUCC---UCA----AAC-AUCCGau--CGUGCGGC- -5'
6877 5' -52.4 NC_001875.2 + 33769 0.66 0.954869
Target:  5'- --uGGGGUaguccucaaacgagUUGUGGcGCUcgaucAGCAUGCCGa -3'
miRNA:   3'- aauCCUCA--------------AACAUC-CGA-----UCGUGCGGC- -5'
6877 5' -52.4 NC_001875.2 + 14603 0.66 0.951938
Target:  5'- -aAGGAaaauagUUGUGGGgccuguucCUGGCGCGCCu -3'
miRNA:   3'- aaUCCUca----AACAUCC--------GAUCGUGCGGc -5'
6877 5' -52.4 NC_001875.2 + 14523 0.66 0.947533
Target:  5'- -cGGGGGaacuu-GGCgGGCACGCCGc -3'
miRNA:   3'- aaUCCUCaaacauCCGaUCGUGCGGC- -5'
6877 5' -52.4 NC_001875.2 + 263 0.67 0.937944
Target:  5'- --cGGGGUcgUUGUAuuGCUGGCGuCGCCGc -3'
miRNA:   3'- aauCCUCA--AACAUc-CGAUCGU-GCGGC- -5'
6877 5' -52.4 NC_001875.2 + 67750 0.67 0.931685
Target:  5'- --cGGAGUUUGUcgccaAGGUgauuuuugucaaGGCGCGCCu -3'
miRNA:   3'- aauCCUCAAACA-----UCCGa-----------UCGUGCGGc -5'
6877 5' -52.4 NC_001875.2 + 102102 0.68 0.915596
Target:  5'- ---uGAGUUUGUGGGCc-GCuACGCCu -3'
miRNA:   3'- aaucCUCAAACAUCCGauCG-UGCGGc -5'
6877 5' -52.4 NC_001875.2 + 73773 0.68 0.902171
Target:  5'- aUAGGGGUagaagggUUGUGgcggcggcGGCUggaacggcAGCGCGCCGc -3'
miRNA:   3'- aAUCCUCA-------AACAU--------CCGA--------UCGUGCGGC- -5'
6877 5' -52.4 NC_001875.2 + 126544 0.69 0.874242
Target:  5'- --uGGAGUggucGUcGGGCgcgGGCACGUCGg -3'
miRNA:   3'- aauCCUCAaa--CA-UCCGa--UCGUGCGGC- -5'
6877 5' -52.4 NC_001875.2 + 129519 0.69 0.874242
Target:  5'- -cAGGAGc-UGcAGGCcgAGCugGCCGa -3'
miRNA:   3'- aaUCCUCaaACaUCCGa-UCGugCGGC- -5'
6877 5' -52.4 NC_001875.2 + 29386 0.71 0.787018
Target:  5'- aUUGGGAGUUUccGGGCggcaAGgGCGCCa -3'
miRNA:   3'- -AAUCCUCAAAcaUCCGa---UCgUGCGGc -5'
6877 5' -52.4 NC_001875.2 + 349 1.07 0.005542
Target:  5'- gUUAGGAGUUUGUAGGCUAGCACGCCGa -3'
miRNA:   3'- -AAUCCUCAAACAUCCGAUCGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.