miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6878 5' -49.2 NC_001875.2 + 18285 0.66 0.994003
Target:  5'- gGUCGCACAAg-GCCGCuucgcGCgcuUAUUGg -3'
miRNA:   3'- gCAGCGUGUUgaCGGCG-----UGau-AUAAU- -5'
6878 5' -49.2 NC_001875.2 + 62029 0.66 0.994003
Target:  5'- aUGUCGC-CAucgcGCUGCUGCGCa------ -3'
miRNA:   3'- -GCAGCGuGU----UGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 124458 0.66 0.994003
Target:  5'- gCGUCGCGCAACcgcgugGCCgauccggcggGCACUGc---- -3'
miRNA:   3'- -GCAGCGUGUUGa-----CGG----------CGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 112847 0.67 0.993031
Target:  5'- gCGgccugCGCGC-ACUGCCGUggauaaaacacGCUAUAUa- -3'
miRNA:   3'- -GCa----GCGUGuUGACGGCG-----------UGAUAUAau -5'
6878 5' -49.2 NC_001875.2 + 21821 0.67 0.993031
Target:  5'- uGUCGCGCcacuggucgAGCUGCgCGCGCg------ -3'
miRNA:   3'- gCAGCGUG---------UUGACG-GCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 77576 0.67 0.993031
Target:  5'- aGUCGUcaaAgGACUGCCGCcgGCUAa---- -3'
miRNA:   3'- gCAGCG---UgUUGACGGCG--UGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 51956 0.67 0.993031
Target:  5'- ---gGCGCGACgUGCCGCACg------ -3'
miRNA:   3'- gcagCGUGUUG-ACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 120169 0.67 0.992927
Target:  5'- aGUCGCguccuuuGCAGCUGC-GCAacaauCUGUGUUAa -3'
miRNA:   3'- gCAGCG-------UGUUGACGgCGU-----GAUAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 112241 0.67 0.992927
Target:  5'- aGUCGUGCAACUGCUuguugucaaauagGCGCUu----- -3'
miRNA:   3'- gCAGCGUGUUGACGG-------------CGUGAuauaau -5'
6878 5' -49.2 NC_001875.2 + 37216 0.67 0.99239
Target:  5'- ---gGCGCAgcggugcagcaagccGCUGCCGCGCUAc---- -3'
miRNA:   3'- gcagCGUGU---------------UGACGGCGUGAUauaau -5'
6878 5' -49.2 NC_001875.2 + 32259 0.67 0.991937
Target:  5'- ---gGCGCGACaacCCGCACUAUGUg- -3'
miRNA:   3'- gcagCGUGUUGac-GGCGUGAUAUAau -5'
6878 5' -49.2 NC_001875.2 + 110311 0.67 0.991937
Target:  5'- aCGgUGCugGACUGCgGCAUguuUAUUAg -3'
miRNA:   3'- -GCaGCGugUUGACGgCGUGau-AUAAU- -5'
6878 5' -49.2 NC_001875.2 + 58043 0.67 0.991218
Target:  5'- uCGUCGCGCaGguugguuuugugcacGCUGaCCGCGCUGUc--- -3'
miRNA:   3'- -GCAGCGUG-U---------------UGAC-GGCGUGAUAuaau -5'
6878 5' -49.2 NC_001875.2 + 86873 0.67 0.990711
Target:  5'- aCGUCGaCGguGCUGCaGCACUAUc--- -3'
miRNA:   3'- -GCAGC-GUguUGACGgCGUGAUAuaau -5'
6878 5' -49.2 NC_001875.2 + 10879 0.67 0.989343
Target:  5'- gCGUCGgugGC-GCUGCCGCGCaacGUGUUGg -3'
miRNA:   3'- -GCAGCg--UGuUGACGGCGUGa--UAUAAU- -5'
6878 5' -49.2 NC_001875.2 + 13483 0.67 0.989343
Target:  5'- -cUCGUACAGCggGCCGcCGCUGUu--- -3'
miRNA:   3'- gcAGCGUGUUGa-CGGC-GUGAUAuaau -5'
6878 5' -49.2 NC_001875.2 + 40731 0.67 0.987823
Target:  5'- --aCGCGCAgacGCUGCUGCACa------ -3'
miRNA:   3'- gcaGCGUGU---UGACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 113688 0.67 0.987823
Target:  5'- gCGUCGCGC-GC-GCCGCACc------ -3'
miRNA:   3'- -GCAGCGUGuUGaCGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 32522 0.67 0.987823
Target:  5'- -uUCGCGCAACguUGCUGCGCa------ -3'
miRNA:   3'- gcAGCGUGUUG--ACGGCGUGauauaau -5'
6878 5' -49.2 NC_001875.2 + 30748 0.68 0.98614
Target:  5'- aCGU-GCAC-GCUGUCGCugUAUAg-- -3'
miRNA:   3'- -GCAgCGUGuUGACGGCGugAUAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.