miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6879 3' -60.1 NC_001875.2 + 16058 0.66 0.67776
Target:  5'- cUGGGaCGaauugcuCGAGGACGGCucGCGG-CGGUu -3'
miRNA:   3'- aACCC-GC-------GCUCUUGCCG--CGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 129965 0.66 0.668719
Target:  5'- -gGcGGCgGCGGcGGCGGCGgCGG-CGGCa -3'
miRNA:   3'- aaC-CCG-CGCUcUUGCCGC-GUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 102000 0.66 0.668719
Target:  5'- --aGGUGcCGGGcACGGgGCcGUCGGCc -3'
miRNA:   3'- aacCCGC-GCUCuUGCCgCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 41456 0.66 0.668719
Target:  5'- --aGGCGCcGGuuGCGGCGCGcgCGGCg -3'
miRNA:   3'- aacCCGCGcUCu-UGCCGCGUcaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 95235 0.66 0.658646
Target:  5'- -gGuGGUGCaAGGGCGacGCGCAG-CGGCu -3'
miRNA:   3'- aaC-CCGCGcUCUUGC--CGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 31867 0.66 0.658646
Target:  5'- ---cGCGCGuGGACuGGCGCcgguugcaAGUUGGCg -3'
miRNA:   3'- aaccCGCGCuCUUG-CCGCG--------UCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 93402 0.66 0.65562
Target:  5'- -cGGGCGCGuuaaucagccguuuAGAAgaGGCGCugcaCGGCg -3'
miRNA:   3'- aaCCCGCGC--------------UCUUg-CCGCGuca-GCCG- -5'
6879 3' -60.1 NC_001875.2 + 91425 0.66 0.65562
Target:  5'- aUGGGcCGCagcucgcuguagcuGAGcGGCGGCGC-GUgGGCg -3'
miRNA:   3'- aACCC-GCG--------------CUC-UUGCCGCGuCAgCCG- -5'
6879 3' -60.1 NC_001875.2 + 113618 0.67 0.648553
Target:  5'- -cGGGcCGCGgcggcaAGAGCGGCGa---CGGCg -3'
miRNA:   3'- aaCCC-GCGC------UCUUGCCGCgucaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 19345 0.67 0.648553
Target:  5'- gUGGGCGUGGuGcGCGGaGC-GUUGGCc -3'
miRNA:   3'- aACCCGCGCU-CuUGCCgCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 75647 0.67 0.638447
Target:  5'- --cGGCGuCGGcGAUGGCGUuggcGUCGGCg -3'
miRNA:   3'- aacCCGC-GCUcUUGCCGCGu---CAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 2540 0.67 0.638447
Target:  5'- -cGGGC-CGGuGAacaACGGCGC-GUCGGg -3'
miRNA:   3'- aaCCCGcGCU-CU---UGCCGCGuCAGCCg -5'
6879 3' -60.1 NC_001875.2 + 85290 0.67 0.638447
Target:  5'- -cGGuuuGCGCGG--GCGGCGCGGgcgCGGg -3'
miRNA:   3'- aaCC---CGCGCUcuUGCCGCGUCa--GCCg -5'
6879 3' -60.1 NC_001875.2 + 23753 0.67 0.638447
Target:  5'- aUGGcCGUGAGuGCGGUGCAGcCcGCa -3'
miRNA:   3'- aACCcGCGCUCuUGCCGCGUCaGcCG- -5'
6879 3' -60.1 NC_001875.2 + 44427 0.67 0.638447
Target:  5'- gUGGG-GCGGucguuGAACgcgaucagcaaGGCGCcGUCGGCg -3'
miRNA:   3'- aACCCgCGCU-----CUUG-----------CCGCGuCAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 50387 0.67 0.638447
Target:  5'- -cGGaccaGCGUGuacuuuuugcGGACGGCGCAGaCGGCc -3'
miRNA:   3'- aaCC----CGCGCu---------CUUGCCGCGUCaGCCG- -5'
6879 3' -60.1 NC_001875.2 + 49351 0.67 0.628336
Target:  5'- gUGGGCgGCGGGccgUGGUGCAacaugCGGCg -3'
miRNA:   3'- aACCCG-CGCUCuu-GCCGCGUca---GCCG- -5'
6879 3' -60.1 NC_001875.2 + 29407 0.67 0.628336
Target:  5'- -aGGGCGCcaaccCGGCGC--UCGGCa -3'
miRNA:   3'- aaCCCGCGcucuuGCCGCGucAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 18554 0.67 0.628336
Target:  5'- cUGGGCGUGGGugucuUGaGCGCGcuuugcgucGUUGGCg -3'
miRNA:   3'- aACCCGCGCUCuu---GC-CGCGU---------CAGCCG- -5'
6879 3' -60.1 NC_001875.2 + 100869 0.67 0.618228
Target:  5'- uUUGaGCGCGAGGcgcaGCGcGCGC-GUgGGCg -3'
miRNA:   3'- -AACcCGCGCUCU----UGC-CGCGuCAgCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.