Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6880 | 3' | -61.3 | NC_001875.2 | + | 1164 | 1.08 | 0.000855 |
Target: 5'- gACCAGCCAGAGGCGUCGUCGCGGCACu -3' miRNA: 3'- -UGGUCGGUCUCCGCAGCAGCGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 91747 | 0.76 | 0.159755 |
Target: 5'- cGCCAGCCAGuGGCG-CGUCaGCGcCGCg -3' miRNA: 3'- -UGGUCGGUCuCCGCaGCAG-CGCcGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 58523 | 0.76 | 0.159755 |
Target: 5'- cGCCGGaCCuguGucGCGUCGUCGCGGCGu -3' miRNA: 3'- -UGGUC-GGu--CucCGCAGCAGCGCCGUg -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 90442 | 0.75 | 0.204356 |
Target: 5'- gACgCGcGCgCAGAGGCGUCGguggGCGGCGCg -3' miRNA: 3'- -UG-GU-CG-GUCUCCGCAGCag--CGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 113666 | 0.73 | 0.277424 |
Target: 5'- cGCCGGCaccgccaCAGuGGCGgCGUCGCGcGCGCc -3' miRNA: 3'- -UGGUCG-------GUCuCCGCaGCAGCGC-CGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 41699 | 0.72 | 0.297832 |
Target: 5'- uCCugGGCCAG-GGCGUaugCGCGGCGCu -3' miRNA: 3'- uGG--UCGGUCuCCGCAgcaGCGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 99263 | 0.72 | 0.304659 |
Target: 5'- gGCUAGUC-GAGGUG-CG-CGCGGCACu -3' miRNA: 3'- -UGGUCGGuCUCCGCaGCaGCGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 82037 | 0.72 | 0.311606 |
Target: 5'- gGCCAGCCAGAaGUuuGUUGgggGCGGCGCg -3' miRNA: 3'- -UGGUCGGUCUcCG--CAGCag-CGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 109995 | 0.72 | 0.311606 |
Target: 5'- cGCgCGGUCGGuGGCGUUGaCGCGcGCGCa -3' miRNA: 3'- -UG-GUCGGUCuCCGCAGCaGCGC-CGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 112718 | 0.72 | 0.318672 |
Target: 5'- cGCC-GCCguGGuAGGCG-CGUCGCGcGCACa -3' miRNA: 3'- -UGGuCGG--UC-UCCGCaGCAGCGC-CGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 20793 | 0.71 | 0.325858 |
Target: 5'- aGCCGucgacGCgCAGugcgcGGGCGUCGUCGCaGCGCu -3' miRNA: 3'- -UGGU-----CG-GUC-----UCCGCAGCAGCGcCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 35380 | 0.71 | 0.333164 |
Target: 5'- -gCAGCUGGAGGCGcugcUGUcCGUGGCGCg -3' miRNA: 3'- ugGUCGGUCUCCGCa---GCA-GCGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 84378 | 0.71 | 0.339841 |
Target: 5'- gGCCuGCCGGGgcGGCGUCGguagCcggagcuucggcgGCGGCGCg -3' miRNA: 3'- -UGGuCGGUCU--CCGCAGCa---G-------------CGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 124770 | 0.7 | 0.371473 |
Target: 5'- cGCacaGGCCGGuGGCGUCGcCGCaGCGg -3' miRNA: 3'- -UGg--UCGGUCuCCGCAGCaGCGcCGUg -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 94255 | 0.7 | 0.379487 |
Target: 5'- gGCCGGCCGc-GGCGcUCG-CGCcGGCGCa -3' miRNA: 3'- -UGGUCGGUcuCCGC-AGCaGCG-CCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 36598 | 0.7 | 0.382725 |
Target: 5'- gGCgCAGCCGcuGcGCGUCGcccuugcaccaccgaUCGCGGCACa -3' miRNA: 3'- -UG-GUCGGUcuC-CGCAGC---------------AGCGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 49547 | 0.7 | 0.387616 |
Target: 5'- cGCCGcGCCAG-GGCGUCGUguUGUGGaugaGCa -3' miRNA: 3'- -UGGU-CGGUCuCCGCAGCA--GCGCCg---UG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 1385 | 0.7 | 0.412679 |
Target: 5'- cGCguGCUAGcGGUG-CGUCaGCGGCGCc -3' miRNA: 3'- -UGguCGGUCuCCGCaGCAG-CGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 37885 | 0.69 | 0.421253 |
Target: 5'- gGCCGcGCCAGcGGC-UUGcuggCGCGGCACu -3' miRNA: 3'- -UGGU-CGGUCuCCGcAGCa---GCGCCGUG- -5' |
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6880 | 3' | -61.3 | NC_001875.2 | + | 21240 | 0.69 | 0.429933 |
Target: 5'- cACCAGUUGGcgaagcugguccAGGCGcgCG-CGCGGCGCg -3' miRNA: 3'- -UGGUCGGUC------------UCCGCa-GCaGCGCCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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