miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6880 3' -61.3 NC_001875.2 + 28511 0.67 0.570819
Target:  5'- gGCUAGCC-GucGCGcacgCGUCGCccGGCACg -3'
miRNA:   3'- -UGGUCGGuCucCGCa---GCAGCG--CCGUG- -5'
6880 3' -61.3 NC_001875.2 + 21932 0.67 0.570819
Target:  5'- --uGGCUAagcGGGGCGUuaaaCGuUCGCGGCGCg -3'
miRNA:   3'- uggUCGGU---CUCCGCA----GC-AGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 95406 0.67 0.56983
Target:  5'- -gCAGCgCGccGGCGUCGcaaagguaaggccUCGCGGCGCc -3'
miRNA:   3'- ugGUCG-GUcuCCGCAGC-------------AGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 103035 0.67 0.56983
Target:  5'- cACCGGCUcgcucacGGAGaagcCGUCGUCGUcGCACa -3'
miRNA:   3'- -UGGUCGG-------UCUCc---GCAGCAGCGcCGUG- -5'
6880 3' -61.3 NC_001875.2 + 6363 0.67 0.560946
Target:  5'- cUCGGCCAcGAuGuCGUCGUCG-GGCACc -3'
miRNA:   3'- uGGUCGGU-CUcC-GCAGCAGCgCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 113346 0.67 0.560946
Target:  5'- gGCgGGUCGGGcgcggcuGCGUCGcUGCGGCGCg -3'
miRNA:   3'- -UGgUCGGUCUc------CGCAGCaGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 102703 0.67 0.560946
Target:  5'- cACUGGCCAG-GGCGacaaGaCGCGGUGCu -3'
miRNA:   3'- -UGGUCGGUCuCCGCag--CaGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 12777 0.67 0.551119
Target:  5'- uCCAGCCGG-GGCGcCG-CGCacauGCGCa -3'
miRNA:   3'- uGGUCGGUCuCCGCaGCaGCGc---CGUG- -5'
6880 3' -61.3 NC_001875.2 + 131750 0.67 0.551119
Target:  5'- uUgGGCCGGcGGCGgaUCGg-GCGGCGCg -3'
miRNA:   3'- uGgUCGGUCuCCGC--AGCagCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 66107 0.67 0.551119
Target:  5'- gGCCcGCgCGGcGGGCGgCGagGCGGCGCc -3'
miRNA:   3'- -UGGuCG-GUC-UCCGCaGCagCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 39316 0.67 0.551119
Target:  5'- cACCGuGCCGGcGGCGUgCGcgCGCugcaGGCGCa -3'
miRNA:   3'- -UGGU-CGGUCuCCGCA-GCa-GCG----CCGUG- -5'
6880 3' -61.3 NC_001875.2 + 65773 0.67 0.540372
Target:  5'- -gCGGCUGGGcgagcacgcgcgcGGCGUCGgcgCGCGGUGCc -3'
miRNA:   3'- ugGUCGGUCU-------------CCGCAGCa--GCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 90886 0.68 0.531631
Target:  5'- uGCUGGCCGGGGcCG-CGUCG-GGCAUg -3'
miRNA:   3'- -UGGUCGGUCUCcGCaGCAGCgCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 105550 0.68 0.52198
Target:  5'- -gCAGUCGucGGUGUCGUCGUcGCACu -3'
miRNA:   3'- ugGUCGGUcuCCGCAGCAGCGcCGUG- -5'
6880 3' -61.3 NC_001875.2 + 92716 0.68 0.52198
Target:  5'- cGCCGGUCAGGGuCGUCGcCGCcauggaGCGCg -3'
miRNA:   3'- -UGGUCGGUCUCcGCAGCaGCGc-----CGUG- -5'
6880 3' -61.3 NC_001875.2 + 33461 0.68 0.512398
Target:  5'- gGCCGGCCAGuGGU--CGaaaGUGGCGCg -3'
miRNA:   3'- -UGGUCGGUCuCCGcaGCag-CGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 91709 0.68 0.493458
Target:  5'- uGCCAGCCcauGGAGGUGaCGgcCGuCGGCAa -3'
miRNA:   3'- -UGGUCGG---UCUCCGCaGCa-GC-GCCGUg -5'
6880 3' -61.3 NC_001875.2 + 46127 0.68 0.493458
Target:  5'- gACCAcGCU--GGGCaaccaGUCGaUCGCGGCGCg -3'
miRNA:   3'- -UGGU-CGGucUCCG-----CAGC-AGCGCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 2537 0.68 0.493458
Target:  5'- cGCCgGGCCGGugaacaacGGCG-CGUCG-GGCGCa -3'
miRNA:   3'- -UGG-UCGGUCu-------CCGCaGCAGCgCCGUG- -5'
6880 3' -61.3 NC_001875.2 + 81308 0.68 0.48132
Target:  5'- cGCC-GCCGGcGGCGccuccuccucgucaUCGUgccgCGCGGCGCg -3'
miRNA:   3'- -UGGuCGGUCuCCGC--------------AGCA----GCGCCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.