Results 21 - 40 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6881 | 3' | -65.3 | NC_001875.2 | + | 88239 | 0.66 | 0.505357 |
Target: 5'- uCGGCGCaCGcgcaaccaggcaGUCGaGUCGCuCGCCGCCa -3' miRNA: 3'- -GCUGUG-GC------------CAGCgCGGCG-GCGGCGGc -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 10373 | 0.66 | 0.505357 |
Target: 5'- aCGGC-CUGGcCGaaaacuuugaaCGCCGCCGC-GCCGu -3' miRNA: 3'- -GCUGuGGCCaGC-----------GCGGCGGCGgCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 100264 | 0.66 | 0.505357 |
Target: 5'- uGugGgCGG-CGCGCaagGaaGCCGCCGg -3' miRNA: 3'- gCugUgGCCaGCGCGg--CggCGGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 95247 | 0.66 | 0.505357 |
Target: 5'- gCGACGCgcagCGGcUGCGCCGCauuuugcaacaGCCGCgCGu -3' miRNA: 3'- -GCUGUG----GCCaGCGCGGCGg----------CGGCG-GC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 8493 | 0.66 | 0.505357 |
Target: 5'- -cACGCCGG--GCGCCGuCCGUgugggCGCCGc -3' miRNA: 3'- gcUGUGGCCagCGCGGC-GGCG-----GCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 70103 | 0.66 | 0.505357 |
Target: 5'- uGAC-CCcuUUGCGCCGCaGCCgGCCGa -3' miRNA: 3'- gCUGuGGccAGCGCGGCGgCGG-CGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 90127 | 0.66 | 0.496326 |
Target: 5'- gCGACGCCGcgcaGCGCCGCgcauaCGCCcugGCCc -3' miRNA: 3'- -GCUGUGGCcag-CGCGGCG-----GCGG---CGGc -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 117349 | 0.66 | 0.496326 |
Target: 5'- gGGCgaACCGG-CGgGCCgGCUGgCCGUCGg -3' miRNA: 3'- gCUG--UGGCCaGCgCGG-CGGC-GGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 20002 | 0.66 | 0.496326 |
Target: 5'- aGACaccugGCCGGcUCGCGCaGCCGUcaCGCgGa -3' miRNA: 3'- gCUG-----UGGCC-AGCGCGgCGGCG--GCGgC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 20768 | 0.66 | 0.496326 |
Target: 5'- aCGGCGCCGG-CGuCGUccaCGUagaaGCCGUCGa -3' miRNA: 3'- -GCUGUGGCCaGC-GCG---GCGg---CGGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 39294 | 0.66 | 0.496326 |
Target: 5'- cCGACACCaaGUgCGCGCUGCacaccguGCCGgCGg -3' miRNA: 3'- -GCUGUGGc-CA-GCGCGGCGg------CGGCgGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 62614 | 0.66 | 0.490942 |
Target: 5'- uCGGCACagcgCGCGUCGCCcgaacaagcguacugGCCGUCGg -3' miRNA: 3'- -GCUGUGgccaGCGCGGCGG---------------CGGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 92796 | 0.66 | 0.487368 |
Target: 5'- gCGcUugCGGUacaGCGCC-CCGCCgauGCCGa -3' miRNA: 3'- -GCuGugGCCAg--CGCGGcGGCGG---CGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 12284 | 0.66 | 0.487368 |
Target: 5'- aGGcCACCGuGU-GCaGCCgGCaCGCCGCCGu -3' miRNA: 3'- gCU-GUGGC-CAgCG-CGG-CG-GCGGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 25290 | 0.66 | 0.487368 |
Target: 5'- gGGCgACUGGUCGCG-CGCuCGUCGaCCc -3' miRNA: 3'- gCUG-UGGCCAGCGCgGCG-GCGGC-GGc -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 49998 | 0.66 | 0.487368 |
Target: 5'- gCGGCGCuugucgCGGUUgggGCGCgCGUgGUCGCCGg -3' miRNA: 3'- -GCUGUG------GCCAG---CGCG-GCGgCGGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 63727 | 0.66 | 0.487368 |
Target: 5'- gCGACGgCGGgCGCuUCGCCGgCGUCGc -3' miRNA: 3'- -GCUGUgGCCaGCGcGGCGGCgGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 93937 | 0.66 | 0.487368 |
Target: 5'- aCGACG-CGGUgccaGUGCCGCgccagcaaGCCGCUGg -3' miRNA: 3'- -GCUGUgGCCAg---CGCGGCGg-------CGGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 83864 | 0.66 | 0.487368 |
Target: 5'- uCGACGCCccgcucgcacGGUUccuCGUCGCUGCUGUCGg -3' miRNA: 3'- -GCUGUGG----------CCAGc--GCGGCGGCGGCGGC- -5' |
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6881 | 3' | -65.3 | NC_001875.2 | + | 90382 | 0.66 | 0.487368 |
Target: 5'- -cACGCCGcG-CGCGCCGCaacCGgCGCCu -3' miRNA: 3'- gcUGUGGC-CaGCGCGGCG---GCgGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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