miRNA display CGI


Results 21 - 40 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6882 3' -61.7 NC_001875.2 + 67377 0.66 0.660749
Target:  5'- uCGuCCACCGGC--UCGUCGGC-CAa- -3'
miRNA:   3'- -GCuGGUGGCCGgcAGCAGCCGcGUgc -5'
6882 3' -61.7 NC_001875.2 + 124723 0.66 0.660749
Target:  5'- aGGCaCGCguCGGCCGUuucgccgcCGUCGagccGCGCACGu -3'
miRNA:   3'- gCUG-GUG--GCCGGCA--------GCAGC----CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 63289 0.66 0.660749
Target:  5'- nGACCGCC-GCCGcCG-CGGCgGCAa- -3'
miRNA:   3'- gCUGGUGGcCGGCaGCaGCCG-CGUgc -5'
6882 3' -61.7 NC_001875.2 + 67465 0.66 0.660749
Target:  5'- gGGCgCGCUGGCCGU-GUucagccUGGUGUACGa -3'
miRNA:   3'- gCUG-GUGGCCGGCAgCA------GCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 66922 0.66 0.650998
Target:  5'- uGGCgCACaauGUCGUCGUCGcucuGCGCGCGc -3'
miRNA:   3'- gCUG-GUGgc-CGGCAGCAGC----CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 89736 0.66 0.650998
Target:  5'- gGACUgcGCCGGCCGuacgaguguuUCGgcaaaaugguggUCGGCGaCGCGc -3'
miRNA:   3'- gCUGG--UGGCCGGC----------AGC------------AGCCGC-GUGC- -5'
6882 3' -61.7 NC_001875.2 + 36862 0.66 0.650998
Target:  5'- uGuACCGCaaaaGaaCGUCGUCGuGCGCGCGg -3'
miRNA:   3'- gC-UGGUGg---CcgGCAGCAGC-CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 103316 0.66 0.650998
Target:  5'- uGACCGgCGuGCCGggCGaCGcGUGCGCGa -3'
miRNA:   3'- gCUGGUgGC-CGGCa-GCaGC-CGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 87360 0.66 0.641233
Target:  5'- uCGGCC--UGGUCG-CGcCGGUGCACGa -3'
miRNA:   3'- -GCUGGugGCCGGCaGCaGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 118985 0.66 0.641233
Target:  5'- aCGACCAaccaCGGCUG-CGUgcuagcCGGCGC-CGc -3'
miRNA:   3'- -GCUGGUg---GCCGGCaGCA------GCCGCGuGC- -5'
6882 3' -61.7 NC_001875.2 + 53874 0.66 0.641233
Target:  5'- uCGGCCugUuggucgugcGGCCGcCG-CGGCGCAa- -3'
miRNA:   3'- -GCUGGugG---------CCGGCaGCaGCCGCGUgc -5'
6882 3' -61.7 NC_001875.2 + 31040 0.66 0.641233
Target:  5'- cCGACCcgGCgCGGCCGUaCGUCGGacaacUGUGCc -3'
miRNA:   3'- -GCUGG--UG-GCCGGCA-GCAGCC-----GCGUGc -5'
6882 3' -61.7 NC_001875.2 + 16075 0.66 0.641233
Target:  5'- gGACgCACaCGG-CGcCGguuUCGGCGCACGc -3'
miRNA:   3'- gCUG-GUG-GCCgGCaGC---AGCCGCGUGC- -5'
6882 3' -61.7 NC_001875.2 + 11803 0.66 0.641233
Target:  5'- -uGuuGCCGGCCG-CGUCGGUGUuuguggucGCGc -3'
miRNA:   3'- gcUggUGGCCGGCaGCAGCCGCG--------UGC- -5'
6882 3' -61.7 NC_001875.2 + 94206 0.67 0.631463
Target:  5'- gGACagcgucuuGCCGaGCCccauGUCGUCGGCgaGCACGc -3'
miRNA:   3'- gCUGg-------UGGC-CGG----CAGCAGCCG--CGUGC- -5'
6882 3' -61.7 NC_001875.2 + 77266 0.67 0.631463
Target:  5'- -cGCCGCCgggcgaagcGGCCGcCG-CGGCGCAg- -3'
miRNA:   3'- gcUGGUGG---------CCGGCaGCaGCCGCGUgc -5'
6882 3' -61.7 NC_001875.2 + 81308 0.67 0.621692
Target:  5'- -cGCCGCCGGCgGcgccuccuccUCGUCaucgugccgcgcGGCGCGCu -3'
miRNA:   3'- gcUGGUGGCCGgC----------AGCAG------------CCGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 103018 0.67 0.614856
Target:  5'- uCGGCCACCcugacggucaccgGcucgcucacggagaaGCCGUCGUCGuCGCACa -3'
miRNA:   3'- -GCUGGUGG-------------C---------------CGGCAGCAGCcGCGUGc -5'
6882 3' -61.7 NC_001875.2 + 80648 0.67 0.611928
Target:  5'- gCGGCgccagaACCGcGCCGUCGUgGGCaaacugGCGCa -3'
miRNA:   3'- -GCUGg-----UGGC-CGGCAGCAgCCG------CGUGc -5'
6882 3' -61.7 NC_001875.2 + 33089 0.67 0.602179
Target:  5'- uGAUgGCgGcGCCGUCG-CGGCugaGCACGc -3'
miRNA:   3'- gCUGgUGgC-CGGCAGCaGCCG---CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.