miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6882 5' -53.7 NC_001875.2 + 85484 0.66 0.952185
Target:  5'- aGCUGCGGCCaaauuUCCAucuGCAUGUuuucgucuauuaGACGGc- -3'
miRNA:   3'- -CGGCGUCGG-----AGGU---UGUACA------------CUGCUag -5'
6882 5' -53.7 NC_001875.2 + 68589 0.67 0.91089
Target:  5'- cGCCGCuGGCCgccgagcCCGACGcguuugugGUGACGggCg -3'
miRNA:   3'- -CGGCG-UCGGa------GGUUGUa-------CACUGCuaG- -5'
6882 5' -53.7 NC_001875.2 + 105606 0.67 0.91089
Target:  5'- cGCCGCAGCg-CCAagagcgguugcACGUGUGGUGcgCa -3'
miRNA:   3'- -CGGCGUCGgaGGU-----------UGUACACUGCuaG- -5'
6882 5' -53.7 NC_001875.2 + 5949 0.67 0.922727
Target:  5'- gGgCGCGGCCUCgCAguACAcGUGAaugUGGUCg -3'
miRNA:   3'- -CgGCGUCGGAG-GU--UGUaCACU---GCUAG- -5'
6882 5' -53.7 NC_001875.2 + 13614 0.66 0.933553
Target:  5'- cGuuGCGaucGUCUCCAAUGUGgcaGGCGGUUg -3'
miRNA:   3'- -CggCGU---CGGAGGUUGUACa--CUGCUAG- -5'
6882 5' -53.7 NC_001875.2 + 77497 0.66 0.938586
Target:  5'- cGCCGgGcGCgUCCAACGacGUGACcGUCa -3'
miRNA:   3'- -CGGCgU-CGgAGGUUGUa-CACUGcUAG- -5'
6882 5' -53.7 NC_001875.2 + 66696 0.66 0.942431
Target:  5'- uGCUGCAcgugaccGCCUCCGACAccaUGUacugcacGGCGAg- -3'
miRNA:   3'- -CGGCGU-------CGGAGGUUGU---ACA-------CUGCUag -5'
6882 5' -53.7 NC_001875.2 + 100613 0.66 0.9479
Target:  5'- gGCCGCGGCCgcuguuugCCu-CGUG-GAUGAg- -3'
miRNA:   3'- -CGGCGUCGGa-------GGuuGUACaCUGCUag -5'
6882 5' -53.7 NC_001875.2 + 5165 0.66 0.952185
Target:  5'- aGCCGCAacguGCUcgUCAgcGCGUGcaUGGCGGUCa -3'
miRNA:   3'- -CGGCGU----CGGa-GGU--UGUAC--ACUGCUAG- -5'
6882 5' -53.7 NC_001875.2 + 10634 0.68 0.891264
Target:  5'- gGCCGguGCCgcCCAGCGUGcaguacuugGGCGGc- -3'
miRNA:   3'- -CGGCguCGGa-GGUUGUACa--------CUGCUag -5'
6882 5' -53.7 NC_001875.2 + 45611 0.68 0.891264
Target:  5'- gGCgCGCAGCaCUCCAACAccagccgcaaguUGUGcgGCGGc- -3'
miRNA:   3'- -CG-GCGUCG-GAGGUUGU------------ACAC--UGCUag -5'
6882 5' -53.7 NC_001875.2 + 37597 0.68 0.890572
Target:  5'- cGCCGCGGCCggCCGcacggcgGCGUGcucgccGACGAc- -3'
miRNA:   3'- -CGGCGUCGGa-GGU-------UGUACa-----CUGCUag -5'
6882 5' -53.7 NC_001875.2 + 93106 0.73 0.640861
Target:  5'- cCCGCuugugguGCgCUCCAGCAacGUGAUGAUCa -3'
miRNA:   3'- cGGCGu------CG-GAGGUUGUa-CACUGCUAG- -5'
6882 5' -53.7 NC_001875.2 + 54420 0.72 0.661899
Target:  5'- uGCCGCucuugucGCCgaaCAGCGcGUGGCGGUCg -3'
miRNA:   3'- -CGGCGu------CGGag-GUUGUaCACUGCUAG- -5'
6882 5' -53.7 NC_001875.2 + 58229 0.72 0.682835
Target:  5'- cGCCGCAGCCgccgCCGcaACAguUGGCGcUCg -3'
miRNA:   3'- -CGGCGUCGGa---GGU--UGUacACUGCuAG- -5'
6882 5' -53.7 NC_001875.2 + 33035 0.72 0.693241
Target:  5'- aUUGCAG-CUCCAuCAUGUGACGAa- -3'
miRNA:   3'- cGGCGUCgGAGGUuGUACACUGCUag -5'
6882 5' -53.7 NC_001875.2 + 30864 0.71 0.734228
Target:  5'- cGCCGCGGCCUgCAGCGcG-GGCGcUUg -3'
miRNA:   3'- -CGGCGUCGGAgGUUGUaCaCUGCuAG- -5'
6882 5' -53.7 NC_001875.2 + 90890 0.71 0.754198
Target:  5'- gGCCGgGGCCgcgUCgGGCAUGuUGACGggCa -3'
miRNA:   3'- -CGGCgUCGG---AGgUUGUAC-ACUGCuaG- -5'
6882 5' -53.7 NC_001875.2 + 102362 0.68 0.869471
Target:  5'- aGCUGCAGUUcgUCCAGCA--UGGCGcgCa -3'
miRNA:   3'- -CGGCGUCGG--AGGUUGUacACUGCuaG- -5'
6882 5' -53.7 NC_001875.2 + 54457 0.68 0.876969
Target:  5'- aGCCGCGgcGCCgcaCAGCGUGUG-CGGc- -3'
miRNA:   3'- -CGGCGU--CGGag-GUUGUACACuGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.