miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6882 5' -53.7 NC_001875.2 + 46372 0.68 0.861748
Target:  5'- gGCCGCAGCUgCUGcGCAUGUGcaGCGAc- -3'
miRNA:   3'- -CGGCGUCGGaGGU-UGUACAC--UGCUag -5'
6882 5' -53.7 NC_001875.2 + 75597 0.7 0.764017
Target:  5'- aCUGCAGCCgcgcgCCGGCGUGU-ACGAg- -3'
miRNA:   3'- cGGCGUCGGa----GGUUGUACAcUGCUag -5'
6882 5' -53.7 NC_001875.2 + 90890 0.71 0.754198
Target:  5'- gGCCGgGGCCgcgUCgGGCAUGuUGACGggCa -3'
miRNA:   3'- -CGGCgUCGG---AGgUUGUAC-ACUGCuaG- -5'
6882 5' -53.7 NC_001875.2 + 101897 0.71 0.754198
Target:  5'- cGCCGUcGCCUUCGGCugccUG-GGCGGUCc -3'
miRNA:   3'- -CGGCGuCGGAGGUUGu---ACaCUGCUAG- -5'
6882 5' -53.7 NC_001875.2 + 30864 0.71 0.734228
Target:  5'- cGCCGCGGCCUgCAGCGcG-GGCGcUUg -3'
miRNA:   3'- -CGGCGUCGGAgGUUGUaCaCUGCuAG- -5'
6882 5' -53.7 NC_001875.2 + 91768 0.72 0.703594
Target:  5'- cGCCGCGGCCUCgucguagugCGGCGUGUuGuCGAg- -3'
miRNA:   3'- -CGGCGUCGGAG---------GUUGUACA-CuGCUag -5'
6882 5' -53.7 NC_001875.2 + 33035 0.72 0.693241
Target:  5'- aUUGCAG-CUCCAuCAUGUGACGAa- -3'
miRNA:   3'- cGGCGUCgGAGGUuGUACACUGCUag -5'
6882 5' -53.7 NC_001875.2 + 58229 0.72 0.682835
Target:  5'- cGCCGCAGCCgccgCCGcaACAguUGGCGcUCg -3'
miRNA:   3'- -CGGCGUCGGa---GGU--UGUacACUGCuAG- -5'
6882 5' -53.7 NC_001875.2 + 54420 0.72 0.661899
Target:  5'- uGCCGCucuugucGCCgaaCAGCGcGUGGCGGUCg -3'
miRNA:   3'- -CGGCGu------CGGag-GUUGUaCACUGCUAG- -5'
6882 5' -53.7 NC_001875.2 + 93106 0.73 0.640861
Target:  5'- cCCGCuugugguGCgCUCCAGCAacGUGAUGAUCa -3'
miRNA:   3'- cGGCGu------CG-GAGGUUGUa-CACUGCUAG- -5'
6882 5' -53.7 NC_001875.2 + 128008 0.75 0.516269
Target:  5'- gGCUGCGGCCgcgCCGGCGUGcgccGACGAc- -3'
miRNA:   3'- -CGGCGUCGGa--GGUUGUACa---CUGCUag -5'
6882 5' -53.7 NC_001875.2 + 33508 0.76 0.438717
Target:  5'- uGCCGCAGCg-CCAACAUGUGcACGu-- -3'
miRNA:   3'- -CGGCGUCGgaGGUUGUACAC-UGCuag -5'
6882 5' -53.7 NC_001875.2 + 3848 1.11 0.002968
Target:  5'- gGCCGCAGCCUCCAACAUGUGACGAUCc -3'
miRNA:   3'- -CGGCGUCGGAGGUUGUACACUGCUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.