miRNA display CGI


Results 21 - 40 of 268 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6883 3' -59.6 NC_001875.2 + 81414 0.66 0.71233
Target:  5'- --uUGCUGACGUGUuccaGCaGCCuGCGCg -3'
miRNA:   3'- cguACGACUGCGCG----CGgCGGuCGUGa -5'
6883 3' -59.6 NC_001875.2 + 85235 0.66 0.71233
Target:  5'- cGCAUGUcGACGaGCGCggguuccgCGCuCGGCGCg -3'
miRNA:   3'- -CGUACGaCUGCgCGCG--------GCG-GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 76096 0.66 0.71233
Target:  5'- ---cGCUGAacguuauggGCGCGCCG-UAGCGCUc -3'
miRNA:   3'- cguaCGACUg--------CGCGCGGCgGUCGUGA- -5'
6883 3' -59.6 NC_001875.2 + 115756 0.66 0.71233
Target:  5'- ---aGC-GGCGUGCGCCaaaCCGGCGCc -3'
miRNA:   3'- cguaCGaCUGCGCGCGGc--GGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 18456 0.66 0.702385
Target:  5'- gGCGcGCgaauCGCGCGCCGCUgaccgGGCAa- -3'
miRNA:   3'- -CGUaCGacu-GCGCGCGGCGG-----UCGUga -5'
6883 3' -59.6 NC_001875.2 + 70226 0.66 0.702385
Target:  5'- gGCGccGCcGACacaGCccgaaGCGCCGCCGGCGCc -3'
miRNA:   3'- -CGUa-CGaCUG---CG-----CGCGGCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 89292 0.66 0.702385
Target:  5'- aGgGUGUaGugGCcgcaugGCGCCGCCAccauGCGCUu -3'
miRNA:   3'- -CgUACGaCugCG------CGCGGCGGU----CGUGA- -5'
6883 3' -59.6 NC_001875.2 + 89518 0.66 0.702385
Target:  5'- uGCA-GUUGGCGuCGCGCCGauaGGCGg- -3'
miRNA:   3'- -CGUaCGACUGC-GCGCGGCgg-UCGUga -5'
6883 3' -59.6 NC_001875.2 + 17564 0.66 0.702385
Target:  5'- ---cGUUGGCGCGagcgGCUGCC-GCACa -3'
miRNA:   3'- cguaCGACUGCGCg---CGGCGGuCGUGa -5'
6883 3' -59.6 NC_001875.2 + 29252 0.66 0.702385
Target:  5'- gGCAuacUGCgGGUGCGCgGCCGCCGaccGCGCc -3'
miRNA:   3'- -CGU---ACGaCUGCGCG-CGGCGGU---CGUGa -5'
6883 3' -59.6 NC_001875.2 + 42753 0.66 0.701387
Target:  5'- cGCAUGgUGAgcgGCGCGCUcgggucgGCCGuGCGCa -3'
miRNA:   3'- -CGUACgACUg--CGCGCGG-------CGGU-CGUGa -5'
6883 3' -59.6 NC_001875.2 + 69222 0.66 0.69939
Target:  5'- cGCuUGUUcgggcGACGCGCGCUGUgccgacuugcccgaCGGCACg -3'
miRNA:   3'- -CGuACGA-----CUGCGCGCGGCG--------------GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 272 0.66 0.69939
Target:  5'- uGUAuUGCUGGCGU-CGCCGCaugcuggccaggucCAGCACc -3'
miRNA:   3'- -CGU-ACGACUGCGcGCGGCG--------------GUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 7106 0.66 0.693384
Target:  5'- cGCGcGCUGGCcgacauugaccgccaCGCGCCGCUugccaGGCGCg -3'
miRNA:   3'- -CGUaCGACUGc--------------GCGCGGCGG-----UCGUGa -5'
6883 3' -59.6 NC_001875.2 + 86940 0.66 0.692381
Target:  5'- -aGUGCgagGGCGa--GCCGCCAGCGu- -3'
miRNA:   3'- cgUACGa--CUGCgcgCGGCGGUCGUga -5'
6883 3' -59.6 NC_001875.2 + 113684 0.66 0.692381
Target:  5'- gGCG-GCgucGCGCGCGCCGCacCAGUAa- -3'
miRNA:   3'- -CGUaCGac-UGCGCGCGGCG--GUCGUga -5'
6883 3' -59.6 NC_001875.2 + 5133 0.66 0.692381
Target:  5'- cGUccGCgGACGUGCGCCGCUucggguuuuugAGcCGCa -3'
miRNA:   3'- -CGuaCGaCUGCGCGCGGCGG-----------UC-GUGa -5'
6883 3' -59.6 NC_001875.2 + 26892 0.66 0.692381
Target:  5'- aUAUGUUGggcguuACGCGCGCguucUGCUGGCGCa -3'
miRNA:   3'- cGUACGAC------UGCGCGCG----GCGGUCGUGa -5'
6883 3' -59.6 NC_001875.2 + 117389 0.66 0.692381
Target:  5'- aGCuUGCUGGcCGCGgGCUucuuuGCCAGCu-- -3'
miRNA:   3'- -CGuACGACU-GCGCgCGG-----CGGUCGuga -5'
6883 3' -59.6 NC_001875.2 + 61592 0.66 0.692381
Target:  5'- gGCGacgGCU--CGgGCGCCGgCGGCGCUu -3'
miRNA:   3'- -CGUa--CGAcuGCgCGCGGCgGUCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.