miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6884 3' -60.4 NC_001875.2 + 16842 0.66 0.644809
Target:  5'- uGUGCUagcaUGCGUAGCcGUGUuaaucggcgccGCCAGCGc -3'
miRNA:   3'- gCGCGG----GCGCAUCGuCACG-----------UGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 85277 0.66 0.634687
Target:  5'- aGCGCCCcgaacacgguuuGCGcgGGCGGcgcggGCGCgGGCAu -3'
miRNA:   3'- gCGCGGG------------CGCa-UCGUCa----CGUGgUCGU- -5'
6884 3' -60.4 NC_001875.2 + 128705 0.66 0.634687
Target:  5'- cCGCGUCCGCGcAGCGGgcuuCGCC-GCc -3'
miRNA:   3'- -GCGCGGGCGCaUCGUCac--GUGGuCGu -5'
6884 3' -60.4 NC_001875.2 + 78457 0.66 0.634687
Target:  5'- uGCGCCCGCaaaAGCGcucgcUGCGCC-GCAg -3'
miRNA:   3'- gCGCGGGCGca-UCGUc----ACGUGGuCGU- -5'
6884 3' -60.4 NC_001875.2 + 124867 0.66 0.634687
Target:  5'- -aUGCCCGCuGUucaAGCAGcGCGCCguGGCGa -3'
miRNA:   3'- gcGCGGGCG-CA---UCGUCaCGUGG--UCGU- -5'
6884 3' -60.4 NC_001875.2 + 108739 0.66 0.634687
Target:  5'- aGCgGCCUuugGCGgGGCAGcUGCACgCGGCGc -3'
miRNA:   3'- gCG-CGGG---CGCaUCGUC-ACGUG-GUCGU- -5'
6884 3' -60.4 NC_001875.2 + 77724 0.66 0.634687
Target:  5'- cCGgGCCCGUuuGUcauGUAcGUGCGCUGGCAg -3'
miRNA:   3'- -GCgCGGGCG--CAu--CGU-CACGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 17346 0.67 0.624562
Target:  5'- cCGCGCgaCCGCGUcAG-AGUGCugCcGCAc -3'
miRNA:   3'- -GCGCG--GGCGCA-UCgUCACGugGuCGU- -5'
6884 3' -60.4 NC_001875.2 + 87452 0.67 0.624562
Target:  5'- gCGCGCgCCGaCGU-GCccaaaauuGUGUACCGGCu -3'
miRNA:   3'- -GCGCG-GGC-GCAuCGu-------CACGUGGUCGu -5'
6884 3' -60.4 NC_001875.2 + 89046 0.67 0.624562
Target:  5'- gCGUGCCCGUGcgcgGGCuggucaaaauuGUGCGCaCGGCc -3'
miRNA:   3'- -GCGCGGGCGCa---UCGu----------CACGUG-GUCGu -5'
6884 3' -60.4 NC_001875.2 + 92582 0.67 0.624562
Target:  5'- cCGC-CCCGCGUcgcGCAGUuucuCCAGCAu -3'
miRNA:   3'- -GCGcGGGCGCAu--CGUCAcgu-GGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 109365 0.67 0.624562
Target:  5'- aCGCGCCC-CGUGGCGuucGUGgACaucaAGCu -3'
miRNA:   3'- -GCGCGGGcGCAUCGU---CACgUGg---UCGu -5'
6884 3' -60.4 NC_001875.2 + 5914 0.67 0.624562
Target:  5'- aGCGCCgGCaUGGCguugGGUaGCGCCGcGCAg -3'
miRNA:   3'- gCGCGGgCGcAUCG----UCA-CGUGGU-CGU- -5'
6884 3' -60.4 NC_001875.2 + 31864 0.67 0.624562
Target:  5'- aGCGCuCCGCucuGUGGCcaacaguccguGGUuCACCAGCGc -3'
miRNA:   3'- gCGCG-GGCG---CAUCG-----------UCAcGUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 86101 0.67 0.622537
Target:  5'- gGCGCCgcguuuacggcuuCGCGUggacguggccaucGGCAGUGCG-CGGCGc -3'
miRNA:   3'- gCGCGG-------------GCGCA-------------UCGUCACGUgGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 86371 0.67 0.614443
Target:  5'- cCGCGCUagacgCGCGgcuGCGG-GCGCCgAGCGc -3'
miRNA:   3'- -GCGCGG-----GCGCau-CGUCaCGUGG-UCGU- -5'
6884 3' -60.4 NC_001875.2 + 73624 0.67 0.614443
Target:  5'- gGCGgCUGCGgcggcugcGGCGGcUGCugCGGCGg -3'
miRNA:   3'- gCGCgGGCGCa-------UCGUC-ACGugGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 55915 0.67 0.614443
Target:  5'- uCGCGgcccaCCCGCGUAauGUGGUugGCCAGCAg -3'
miRNA:   3'- -GCGC-----GGGCGCAU--CGUCAcgUGGUCGU- -5'
6884 3' -60.4 NC_001875.2 + 94792 0.67 0.614443
Target:  5'- cCGCGUCCGCGcgcguGCA--GCGCCGuGCAc -3'
miRNA:   3'- -GCGCGGGCGCau---CGUcaCGUGGU-CGU- -5'
6884 3' -60.4 NC_001875.2 + 11812 0.67 0.614443
Target:  5'- cCGCGUCgGUGUuuGUGGUcGCGCCGGUg -3'
miRNA:   3'- -GCGCGGgCGCAu-CGUCA-CGUGGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.