miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6884 5' -54.7 NC_001875.2 + 124740 0.66 0.929669
Target:  5'- uUCGCCGc--CGUCGAGCCGcgcacGUAGUa -3'
miRNA:   3'- gAGCGGCuacGCGGCUUGGUa----CAUCA- -5'
6884 5' -54.7 NC_001875.2 + 62953 0.67 0.900113
Target:  5'- aCUCGCCGGacGCGgCGucaaaCGUGUAGUu -3'
miRNA:   3'- -GAGCGGCUa-CGCgGCuug--GUACAUCA- -5'
6884 5' -54.7 NC_001875.2 + 63817 0.67 0.886587
Target:  5'- gCUCGCUGAUGuCGUCGuccgacAACC-UGUAGc -3'
miRNA:   3'- -GAGCGGCUAC-GCGGC------UUGGuACAUCa -5'
6884 5' -54.7 NC_001875.2 + 68588 0.67 0.872129
Target:  5'- -gCGCCGcugGcCGCCGAGCCcgacgcguuUGUGGUg -3'
miRNA:   3'- gaGCGGCua-C-GCGGCUUGGu--------ACAUCA- -5'
6884 5' -54.7 NC_001875.2 + 49872 0.68 0.864562
Target:  5'- cCUUGCCG--GCGCC-AACCAaGUGGUc -3'
miRNA:   3'- -GAGCGGCuaCGCGGcUUGGUaCAUCA- -5'
6884 5' -54.7 NC_001875.2 + 59929 0.68 0.864562
Target:  5'- gCUCGCCGAcGCGCaCGc-CCA-GUGGg -3'
miRNA:   3'- -GAGCGGCUaCGCG-GCuuGGUaCAUCa -5'
6884 5' -54.7 NC_001875.2 + 31341 0.68 0.856778
Target:  5'- uUUGCCGccGCGCUGAACUGggaucgcGUGGUa -3'
miRNA:   3'- gAGCGGCuaCGCGGCUUGGUa------CAUCA- -5'
6884 5' -54.7 NC_001875.2 + 102953 0.68 0.848782
Target:  5'- uUUGCCucgGCGCCGAaaagACCGUGUGc- -3'
miRNA:   3'- gAGCGGcuaCGCGGCU----UGGUACAUca -5'
6884 5' -54.7 NC_001875.2 + 101923 0.68 0.840583
Target:  5'- --aGCgGcgGCGUCGAACC-UGUAGa -3'
miRNA:   3'- gagCGgCuaCGCGGCUUGGuACAUCa -5'
6884 5' -54.7 NC_001875.2 + 120740 0.68 0.832187
Target:  5'- --aGCUGcgGCGCCGAgacgggGCCGUGUccAGg -3'
miRNA:   3'- gagCGGCuaCGCGGCU------UGGUACA--UCa -5'
6884 5' -54.7 NC_001875.2 + 116173 0.68 0.832187
Target:  5'- aCUCGCCG-UGUGUCGAA-UGUGUGGc -3'
miRNA:   3'- -GAGCGGCuACGCGGCUUgGUACAUCa -5'
6884 5' -54.7 NC_001875.2 + 112707 0.68 0.823602
Target:  5'- gUCGCUGAcgGCGCC--GCCGUGgUAGg -3'
miRNA:   3'- gAGCGGCUa-CGCGGcuUGGUAC-AUCa -5'
6884 5' -54.7 NC_001875.2 + 14503 0.7 0.758938
Target:  5'- -cCGCCGGUucgcccGCGCCGcGCCGUGUc-- -3'
miRNA:   3'- gaGCGGCUA------CGCGGCuUGGUACAuca -5'
6884 5' -54.7 NC_001875.2 + 5335 0.7 0.729289
Target:  5'- gCUCGCCGA-GUGCgGGGCgGUGcUGGUc -3'
miRNA:   3'- -GAGCGGCUaCGCGgCUUGgUAC-AUCA- -5'
6884 5' -54.7 NC_001875.2 + 63962 0.72 0.626234
Target:  5'- gUCGCCGAccGCGCUGAACCAgaaucUGgcGa -3'
miRNA:   3'- gAGCGGCUa-CGCGGCUUGGU-----ACauCa -5'
6884 5' -54.7 NC_001875.2 + 128018 0.73 0.595007
Target:  5'- -gCGCCGGcgUGCGCCGAcgacgGCCG-GUGGUc -3'
miRNA:   3'- gaGCGGCU--ACGCGGCU-----UGGUaCAUCA- -5'
6884 5' -54.7 NC_001875.2 + 8494 0.76 0.409887
Target:  5'- -aCGCCGG-GCGCCGu-CCGUGUGGg -3'
miRNA:   3'- gaGCGGCUaCGCGGCuuGGUACAUCa -5'
6884 5' -54.7 NC_001875.2 + 5882 1.07 0.004369
Target:  5'- cCUCGCCGAUGCGCCGAACCAUGUAGUc -3'
miRNA:   3'- -GAGCGGCUACGCGGCUUGGUACAUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.