miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6885 5' -54.5 NC_001875.2 + 110393 0.67 0.866975
Target:  5'- gCUCGUGCGUgCCcguggagaucaAGUGCccguucaacuACCGCGACAc -3'
miRNA:   3'- -GGGCACGCA-GG-----------UUACG----------UGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 107827 0.68 0.859202
Target:  5'- gCCGagcccGCGcCCGGUGCGCCuuGCGACGc -3'
miRNA:   3'- gGGCa----CGCaGGUUACGUGG--CGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 39189 0.68 0.843015
Target:  5'- -gCGUgGCGUUuaCGGUGCGCCGCuACAAc -3'
miRNA:   3'- ggGCA-CGCAG--GUUACGUGGCGuUGUU- -5'
6885 5' -54.5 NC_001875.2 + 48826 0.68 0.843015
Target:  5'- cUCCGcGCG-CUAcgGCGCCGCuuCAAg -3'
miRNA:   3'- -GGGCaCGCaGGUuaCGUGGCGuuGUU- -5'
6885 5' -54.5 NC_001875.2 + 118466 0.68 0.843015
Target:  5'- gCCGUGCGUagaaaCGGUGCGCaccaGCuuCAAc -3'
miRNA:   3'- gGGCACGCAg----GUUACGUGg---CGuuGUU- -5'
6885 5' -54.5 NC_001875.2 + 36560 0.68 0.843015
Target:  5'- cCCCGUGUGcauaCCGAcGCA-CGCGGCGAg -3'
miRNA:   3'- -GGGCACGCa---GGUUaCGUgGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 6947 0.68 0.834616
Target:  5'- gUCGUGCGU-----GCGCCGCGACAu -3'
miRNA:   3'- gGGCACGCAgguuaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 94248 0.69 0.808285
Target:  5'- gCCGUGCGgccggCCGcgGCGCuCGCGccggcGCAu -3'
miRNA:   3'- gGGCACGCa----GGUuaCGUG-GCGU-----UGUu -5'
6885 5' -54.5 NC_001875.2 + 16524 0.69 0.799161
Target:  5'- aCCCGUGU-UCUcgaaAAUGCGCCGCcACGu -3'
miRNA:   3'- -GGGCACGcAGG----UUACGUGGCGuUGUu -5'
6885 5' -54.5 NC_001875.2 + 36787 0.69 0.789876
Target:  5'- aCCCGUcgGCGUCaaucugcaCGGUGCgcguuacgcGCCGCGGCAGu -3'
miRNA:   3'- -GGGCA--CGCAG--------GUUACG---------UGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 34761 0.69 0.789876
Target:  5'- gCCGUGCGUguUCAAUGUaaguGCCGCAuucgucGCAc -3'
miRNA:   3'- gGGCACGCA--GGUUACG----UGGCGU------UGUu -5'
6885 5' -54.5 NC_001875.2 + 74001 0.69 0.789876
Target:  5'- gCCCG-GCGgaCCGGUacgagaGCACCGCGGCGc -3'
miRNA:   3'- -GGGCaCGCa-GGUUA------CGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 39059 0.69 0.780442
Target:  5'- aCCGcaaGCGcauggCCAuuGUGCGCCGCGGCGu -3'
miRNA:   3'- gGGCa--CGCa----GGU--UACGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 54742 0.69 0.780442
Target:  5'- gCCGUGCGggcgcaCCGccgGCACCGcCAGCGc -3'
miRNA:   3'- gGGCACGCa-----GGUua-CGUGGC-GUUGUu -5'
6885 5' -54.5 NC_001875.2 + 81059 0.69 0.770869
Target:  5'- -aCG-GCGUaauGGUGCGCCGCGACGAg -3'
miRNA:   3'- ggGCaCGCAgg-UUACGUGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 73036 0.7 0.760187
Target:  5'- uCCgCGUGCagcugggCCAAcucggcgcuguuuUGCGCCGCGACAGg -3'
miRNA:   3'- -GG-GCACGca-----GGUU-------------ACGUGGCGUUGUU- -5'
6885 5' -54.5 NC_001875.2 + 112547 0.7 0.75134
Target:  5'- cCUCGUcCGUCCAAUGCAgCGUgAACGGa -3'
miRNA:   3'- -GGGCAcGCAGGUUACGUgGCG-UUGUU- -5'
6885 5' -54.5 NC_001875.2 + 90400 0.7 0.75134
Target:  5'- aCCG-GCG-CCuGUGCGCgCGCAGCGg -3'
miRNA:   3'- gGGCaCGCaGGuUACGUG-GCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 8506 0.7 0.741405
Target:  5'- gUCCGUGUGggcgCCGc-GCACUGCAACGc -3'
miRNA:   3'- -GGGCACGCa---GGUuaCGUGGCGUUGUu -5'
6885 5' -54.5 NC_001875.2 + 104151 0.7 0.741405
Target:  5'- uCCCGUggcgauagacGCGUCCGAcauUGUcaacuaucGCCGCGGCAu -3'
miRNA:   3'- -GGGCA----------CGCAGGUU---ACG--------UGGCGUUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.