miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6886 3' -54.3 NC_001875.2 + 91114 0.66 0.916809
Target:  5'- cAUGacaGugUUGGCguuguaguuGAUGACGcGCGCGCGg -3'
miRNA:   3'- uUAC---UugAACCG---------CUGCUGC-CGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 94453 0.66 0.916809
Target:  5'- --cGAACggcGGCaGCGgaaacugcaGCGGCGCGCGc -3'
miRNA:   3'- uuaCUUGaa-CCGcUGC---------UGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 65342 0.66 0.916809
Target:  5'- uGAUGAggcgcgACUUGuagcucuuaaGCGugGugGGCGCaaACGg -3'
miRNA:   3'- -UUACU------UGAAC----------CGCugCugCCGCG--UGC- -5'
6886 3' -54.3 NC_001875.2 + 32772 0.66 0.916809
Target:  5'- --cGAGCgcguccucGcGCGGCGugGGCGgGCGc -3'
miRNA:   3'- uuaCUUGaa------C-CGCUGCugCCGCgUGC- -5'
6886 3' -54.3 NC_001875.2 + 75491 0.66 0.916809
Target:  5'- uGGUGA---UGGCGucgGCGAUGGCGUcgGCGa -3'
miRNA:   3'- -UUACUugaACCGC---UGCUGCCGCG--UGC- -5'
6886 3' -54.3 NC_001875.2 + 96829 0.67 0.910786
Target:  5'- -cUGGACguuaUGcGCGccuuguuUGACGGCGCGCGc -3'
miRNA:   3'- uuACUUGa---AC-CGCu------GCUGCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 65769 0.67 0.910786
Target:  5'- --cGuGCgcGGCgGGCGGCGGCGCGuCGu -3'
miRNA:   3'- uuaCuUGaaCCG-CUGCUGCCGCGU-GC- -5'
6886 3' -54.3 NC_001875.2 + 121416 0.67 0.904514
Target:  5'- uAUGAuuGCUUGGgGuCGggaugcACGGCGCGCc -3'
miRNA:   3'- uUACU--UGAACCgCuGC------UGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 75341 0.67 0.904514
Target:  5'- uGGUGAugGCgucGGCGAUGGCgucGGCGUugGu -3'
miRNA:   3'- -UUACU--UGaa-CCGCUGCUG---CCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 75431 0.67 0.904514
Target:  5'- uGGUGAugGCgucGGCGAUGGCgucGGCGUugGu -3'
miRNA:   3'- -UUACU--UGaa-CCGCUGCUG---CCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 75383 0.67 0.904514
Target:  5'- uGGUGAugGCgucGGCGAUGGCgucGGCGUugGu -3'
miRNA:   3'- -UUACU--UGaa-CCGCUGCUG---CCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 75545 0.67 0.904514
Target:  5'- uGGUGAuaGCgucGGCGAUGGCgucGGCGUugGu -3'
miRNA:   3'- -UUACU--UGaa-CCGCUGCUG---CCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 51539 0.67 0.904514
Target:  5'- --cGGACgc-GCuGGCGACGGCGCuCGu -3'
miRNA:   3'- uuaCUUGaacCG-CUGCUGCCGCGuGC- -5'
6886 3' -54.3 NC_001875.2 + 23170 0.67 0.904514
Target:  5'- --cGGGCacGGCGGCuGCGG-GCACGg -3'
miRNA:   3'- uuaCUUGaaCCGCUGcUGCCgCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 77089 0.67 0.904514
Target:  5'- -uUGcGC-UGGCGGugcCGGCGGUGCGCc -3'
miRNA:   3'- uuACuUGaACCGCU---GCUGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 89953 0.67 0.897997
Target:  5'- --cGGGCaUGGCGcgGCGACaGGUGUugGa -3'
miRNA:   3'- uuaCUUGaACCGC--UGCUG-CCGCGugC- -5'
6886 3' -54.3 NC_001875.2 + 88411 0.67 0.891237
Target:  5'- gAGUGGA--UGGcCGAgGACGGCacGCACGc -3'
miRNA:   3'- -UUACUUgaACC-GCUgCUGCCG--CGUGC- -5'
6886 3' -54.3 NC_001875.2 + 42739 0.67 0.891237
Target:  5'- --cGcGCgcGGCGACGcgcauggugaGCGGCGCGCu -3'
miRNA:   3'- uuaCuUGaaCCGCUGC----------UGCCGCGUGc -5'
6886 3' -54.3 NC_001875.2 + 104965 0.67 0.891237
Target:  5'- cGUGuGC--GGCGGCGGgcUGGUGCACGg -3'
miRNA:   3'- uUACuUGaaCCGCUGCU--GCCGCGUGC- -5'
6886 3' -54.3 NC_001875.2 + 63439 0.67 0.891237
Target:  5'- -uUGAAUUcGGCGuCGGCGGCcagcCGCGa -3'
miRNA:   3'- uuACUUGAaCCGCuGCUGCCGc---GUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.