miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6886 5' -56.9 NC_001875.2 + 6715 1.07 0.002326
Target:  5'- cACCAUGCCCCGCCACAAUUGCGCUCGc -3'
miRNA:   3'- -UGGUACGGGGCGGUGUUAACGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 58229 0.76 0.293958
Target:  5'- cGCCGcaGCCgCCGCCGCAAcaguugGCGCUCGu -3'
miRNA:   3'- -UGGUa-CGG-GGCGGUGUUaa----CGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 94247 0.73 0.411862
Target:  5'- cGCCGUGCggCCgGCCGCg---GCGCUCGc -3'
miRNA:   3'- -UGGUACG--GGgCGGUGuuaaCGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 32961 0.72 0.485596
Target:  5'- cGCCAUGUcgCCCGUguuuacgacgcgCACGguGUUGCGCUCGc -3'
miRNA:   3'- -UGGUACG--GGGCG------------GUGU--UAACGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 130815 0.71 0.534729
Target:  5'- cGCCucggGCCCCGCCAC----GCGCUg- -3'
miRNA:   3'- -UGGua--CGGGGCGGUGuuaaCGCGAgc -5'
6886 5' -56.9 NC_001875.2 + 25376 0.71 0.534729
Target:  5'- aGCCGUcaacguugGCCCgGCgC-CGAUUGCGCUCa -3'
miRNA:   3'- -UGGUA--------CGGGgCG-GuGUUAACGCGAGc -5'
6886 5' -56.9 NC_001875.2 + 99063 0.7 0.585501
Target:  5'- cGCCc-GCCCaCGCCGCGcgaggacGCGCUCGa -3'
miRNA:   3'- -UGGuaCGGG-GCGGUGUuaa----CGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 31916 0.7 0.595785
Target:  5'- gGCCGcgcUGCaCCGCgCGCGggcccgcucGUUGCGCUCGa -3'
miRNA:   3'- -UGGU---ACGgGGCG-GUGU---------UAACGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 39095 0.7 0.606097
Target:  5'- uGCUGUGCCaaCGCUGCAGUUccGCGCUCc -3'
miRNA:   3'- -UGGUACGGg-GCGGUGUUAA--CGCGAGc -5'
6886 5' -56.9 NC_001875.2 + 73357 0.7 0.606097
Target:  5'- cACCAaaUGCCgCGCUAUggU-GCGCUUGu -3'
miRNA:   3'- -UGGU--ACGGgGCGGUGuuAaCGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 59514 0.7 0.606097
Target:  5'- cCCAUGUgCCGCCGCAAaaacGCGCa-- -3'
miRNA:   3'- uGGUACGgGGCGGUGUUaa--CGCGagc -5'
6886 5' -56.9 NC_001875.2 + 49645 0.69 0.64643
Target:  5'- cCCGUGUacucgccguacugCCCGCgGCGGUUGCGCa-- -3'
miRNA:   3'- uGGUACG-------------GGGCGgUGUUAACGCGagc -5'
6886 5' -56.9 NC_001875.2 + 72564 0.69 0.647464
Target:  5'- cGCCAaGCCCguccucuuuaGcCCGCaAAUUGCGCUCGu -3'
miRNA:   3'- -UGGUaCGGGg---------C-GGUG-UUAACGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 89302 0.69 0.647464
Target:  5'- gGCCGcaugGCgCCGCCACca-UGCGCUuCGg -3'
miRNA:   3'- -UGGUa---CGgGGCGGUGuuaACGCGA-GC- -5'
6886 5' -56.9 NC_001875.2 + 23488 0.69 0.678386
Target:  5'- gACCGUGUUggGCCACGucggGCGCUCa -3'
miRNA:   3'- -UGGUACGGggCGGUGUuaa-CGCGAGc -5'
6886 5' -56.9 NC_001875.2 + 77589 0.69 0.688628
Target:  5'- gACCGgcgcaGCCCCGUCACGug-GaacgaGCUCGa -3'
miRNA:   3'- -UGGUa----CGGGGCGGUGUuaaCg----CGAGC- -5'
6886 5' -56.9 NC_001875.2 + 122061 0.68 0.698822
Target:  5'- cGCaGUGCCCggaugUGCCGCG--UGCGCUUGg -3'
miRNA:   3'- -UGgUACGGG-----GCGGUGUuaACGCGAGC- -5'
6886 5' -56.9 NC_001875.2 + 57632 0.68 0.698822
Target:  5'- cGCCAaaCgCCCGCC-CAGUUGCGCg-- -3'
miRNA:   3'- -UGGUacG-GGGCGGuGUUAACGCGagc -5'
6886 5' -56.9 NC_001875.2 + 11417 0.68 0.698822
Target:  5'- ---uUGCCCCGCCguGCGAcUGCGCa-- -3'
miRNA:   3'- ugguACGGGGCGG--UGUUaACGCGagc -5'
6886 5' -56.9 NC_001875.2 + 108685 0.68 0.698822
Target:  5'- cGCCGUGCCCgcaGCCGCccuucGAcUGCGCg-- -3'
miRNA:   3'- -UGGUACGGGg--CGGUG-----UUaACGCGagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.