Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6886 | 5' | -56.9 | NC_001875.2 | + | 131186 | 0.67 | 0.774689 |
Target: 5'- uGCCGUGCCCggaccuguuugagaCGCUGCAAacgcagggcGCGCUUGa -3' miRNA: 3'- -UGGUACGGG--------------GCGGUGUUaa-------CGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 72691 | 0.67 | 0.758452 |
Target: 5'- cACCAgguuuUGCUCCGCgGugcgcgccguUAAUUGCGCUUGc -3' miRNA: 3'- -UGGU-----ACGGGGCGgU----------GUUAACGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 11319 | 0.68 | 0.748744 |
Target: 5'- gGCC-UGCacgaCCGCCACGAUuuggcgagugucUGCGCgguugCGa -3' miRNA: 3'- -UGGuACGg---GGCGGUGUUA------------ACGCGa----GC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 115525 | 0.68 | 0.738931 |
Target: 5'- cGCCGUGUuggugucgaaCCCGuCCACAAUgcugGCGCa-- -3' miRNA: 3'- -UGGUACG----------GGGC-GGUGUUAa---CGCGagc -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 36716 | 0.68 | 0.729022 |
Target: 5'- gGCCGUGgCgCGCUccacaACGGUuagGCGCUCGa -3' miRNA: 3'- -UGGUACgGgGCGG-----UGUUAa--CGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 44885 | 0.68 | 0.729022 |
Target: 5'- cGCUuUGCgCCGCUugGAcgcugGCGCUCGc -3' miRNA: 3'- -UGGuACGgGGCGGugUUaa---CGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 7364 | 0.68 | 0.729022 |
Target: 5'- uGCgGUGCagugCCCGCCggaucggccacGCGGUUGCGCgacgCGg -3' miRNA: 3'- -UGgUACG----GGGCGG-----------UGUUAACGCGa---GC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 119008 | 0.68 | 0.719028 |
Target: 5'- aGCCG-GCgCCGCCGgGuUUGUGUUCGa -3' miRNA: 3'- -UGGUaCGgGGCGGUgUuAACGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 46937 | 0.68 | 0.719028 |
Target: 5'- cCCGUGCUgCGCUACGccaagGUUGUGCUg- -3' miRNA: 3'- uGGUACGGgGCGGUGU-----UAACGCGAgc -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 102566 | 0.68 | 0.708958 |
Target: 5'- gACCGcGCCCCGCCGgc---GCGgUCGg -3' miRNA: 3'- -UGGUaCGGGGCGGUguuaaCGCgAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 118174 | 0.68 | 0.708958 |
Target: 5'- uGCUAuUGCCCUauuugaagcaGCUGCAgAUUGCGCUCa -3' miRNA: 3'- -UGGU-ACGGGG----------CGGUGU-UAACGCGAGc -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 13715 | 0.68 | 0.708958 |
Target: 5'- aACUuUGCgCCCGCCuuggcggcaauGCGGUUGCGCaggCGg -3' miRNA: 3'- -UGGuACG-GGGCGG-----------UGUUAACGCGa--GC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 41464 | 0.68 | 0.708958 |
Target: 5'- cGCCAUcgacgaGCCCgGCCuGCAGUaUGCGC-CGg -3' miRNA: 3'- -UGGUA------CGGGgCGG-UGUUA-ACGCGaGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 12363 | 0.68 | 0.708958 |
Target: 5'- cGCCAaGCCCgacgacgagggUGCCACGGUgcCGCUCGu -3' miRNA: 3'- -UGGUaCGGG-----------GCGGUGUUAacGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 58240 | 0.68 | 0.708958 |
Target: 5'- -gUcgGCCCCcaucGCCGCAGaaaaugGCGCUCGu -3' miRNA: 3'- ugGuaCGGGG----CGGUGUUaa----CGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 11417 | 0.68 | 0.698822 |
Target: 5'- ---uUGCCCCGCCguGCGAcUGCGCa-- -3' miRNA: 3'- ugguACGGGGCGG--UGUUaACGCGagc -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 57632 | 0.68 | 0.698822 |
Target: 5'- cGCCAaaCgCCCGCC-CAGUUGCGCg-- -3' miRNA: 3'- -UGGUacG-GGGCGGuGUUAACGCGagc -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 108685 | 0.68 | 0.698822 |
Target: 5'- cGCCGUGCCCgcaGCCGCccuucGAcUGCGCg-- -3' miRNA: 3'- -UGGUACGGGg--CGGUG-----UUaACGCGagc -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 122061 | 0.68 | 0.698822 |
Target: 5'- cGCaGUGCCCggaugUGCCGCG--UGCGCUUGg -3' miRNA: 3'- -UGgUACGGG-----GCGGUGUuaACGCGAGC- -5' |
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6886 | 5' | -56.9 | NC_001875.2 | + | 9934 | 0.68 | 0.698822 |
Target: 5'- gGCUAUGCUgUGCCcCGAUcUGCGCgUCGa -3' miRNA: 3'- -UGGUACGGgGCGGuGUUA-ACGCG-AGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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