miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 3' -54.5 NC_001875.2 + 99927 0.66 0.898052
Target:  5'- --cGCGCG-CgCgGUGcAGCGCGGCCAAg -3'
miRNA:   3'- aguUGCGCuG-GgUAC-UUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 9586 0.67 0.891263
Target:  5'- aUCGGCGuCGAucaCCCAUu--CGCGGCCGc -3'
miRNA:   3'- -AGUUGC-GCU---GGGUAcuuGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 39796 0.67 0.884234
Target:  5'- uUCGACaaucuCaGCCCGUGGACgucgGCGGCCGAc -3'
miRNA:   3'- -AGUUGc----GcUGGGUACUUG----UGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 80575 0.67 0.876968
Target:  5'- aCAuCGCGGCgCCAUGGAC-CGGuUCGAa -3'
miRNA:   3'- aGUuGCGCUG-GGUACUUGuGCC-GGUU- -5'
6887 3' -54.5 NC_001875.2 + 129339 0.67 0.876968
Target:  5'- aCAacuACGCGGCCgCAUGA---CGGCCGu -3'
miRNA:   3'- aGU---UGCGCUGG-GUACUuguGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 62351 0.67 0.876968
Target:  5'- -gGGCGCGGCgCCAguuUGGGuCGCGcGCCAGg -3'
miRNA:   3'- agUUGCGCUG-GGU---ACUU-GUGC-CGGUU- -5'
6887 3' -54.5 NC_001875.2 + 14559 0.67 0.869471
Target:  5'- --cACGCGGCCauCGUGAagcGCAuCGGCCGc -3'
miRNA:   3'- aguUGCGCUGG--GUACU---UGU-GCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 69972 0.67 0.869471
Target:  5'- -aAACGCGACC----AACACGGUCAGc -3'
miRNA:   3'- agUUGCGCUGGguacUUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 110081 0.67 0.869471
Target:  5'- -aGACGCuGCgCGUGGaggccgccacGCGCGGCCAGa -3'
miRNA:   3'- agUUGCGcUGgGUACU----------UGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 122308 0.67 0.861748
Target:  5'- cCAGcCGCGuCCUAUcGGGCGCGGCUu- -3'
miRNA:   3'- aGUU-GCGCuGGGUA-CUUGUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 33069 0.67 0.861748
Target:  5'- uUCcGCGCGGCuCCAgacuuUGAugGCGGCg-- -3'
miRNA:   3'- -AGuUGCGCUG-GGU-----ACUugUGCCGguu -5'
6887 3' -54.5 NC_001875.2 + 33595 0.67 0.861748
Target:  5'- gCGACGUGGCgguUGAACACGGgCAGc -3'
miRNA:   3'- aGUUGCGCUGgguACUUGUGCCgGUU- -5'
6887 3' -54.5 NC_001875.2 + 92257 0.68 0.853805
Target:  5'- --cACGCGGaCCGUGcugagcAGCGCGGCCGGg -3'
miRNA:   3'- aguUGCGCUgGGUAC------UUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 95175 0.68 0.853805
Target:  5'- -uGACGCGcCCCGaGcucagcgcgcacGACGCGGCCAu -3'
miRNA:   3'- agUUGCGCuGGGUaC------------UUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 5933 0.68 0.853805
Target:  5'- gUAGCGCcGCgCAggUGGGCGCGGCCu- -3'
miRNA:   3'- aGUUGCGcUGgGU--ACUUGUGCCGGuu -5'
6887 3' -54.5 NC_001875.2 + 120965 0.68 0.853805
Target:  5'- --uGCGCGGCagcgCCAccGACGCGGCCAc -3'
miRNA:   3'- aguUGCGCUG----GGUacUUGUGCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 32446 0.68 0.84565
Target:  5'- --uGCGCGACCCGcuGGCGCcGCCGGu -3'
miRNA:   3'- aguUGCGCUGGGUacUUGUGcCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 57122 0.68 0.84565
Target:  5'- cUCAAaGCGGucgUUCuUGAACACGGCCAGg -3'
miRNA:   3'- -AGUUgCGCU---GGGuACUUGUGCCGGUU- -5'
6887 3' -54.5 NC_001875.2 + 68690 0.68 0.84565
Target:  5'- -aAAUGCGuGCCCGUGGACccgugcgcCGGCCGc -3'
miRNA:   3'- agUUGCGC-UGGGUACUUGu-------GCCGGUu -5'
6887 3' -54.5 NC_001875.2 + 97906 0.68 0.837289
Target:  5'- -aAACGCGGCgCA--AGCugGGCCAc -3'
miRNA:   3'- agUUGCGCUGgGUacUUGugCCGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.