miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6887 5' -52.5 NC_001875.2 + 57245 0.66 0.975366
Target:  5'- -gUUGGU--CGUCaGCGUGGAgggguccAGCACCu -3'
miRNA:   3'- cgAACCAguGCAG-CGCGCCU-------UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 56463 0.66 0.972955
Target:  5'- gGCggGGUC-CG-CGCGCGuGuuggucAGCGCCa -3'
miRNA:   3'- -CGaaCCAGuGCaGCGCGC-Cu-----UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 25941 0.66 0.972955
Target:  5'- --gUGGUgGCGcCGCGCccgccaucGGGuacuGCACCg -3'
miRNA:   3'- cgaACCAgUGCaGCGCG--------CCUu---UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 21171 0.67 0.970081
Target:  5'- cGCUUcuuuucGGcaaaaaUCGuCGUCGCGCGGcacggccAGCGCCa -3'
miRNA:   3'- -CGAA------CC------AGU-GCAGCGCGCCu------UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 79484 0.67 0.970081
Target:  5'- uCUUGGaCGC-UgGCGCGGcacGCGCCg -3'
miRNA:   3'- cGAACCaGUGcAgCGCGCCuu-UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 99920 0.67 0.970081
Target:  5'- aGCg-GGcCGCG-CGCGCGGugcAGCGCg -3'
miRNA:   3'- -CGaaCCaGUGCaGCGCGCCu--UUGUGg -5'
6887 5' -52.5 NC_001875.2 + 61645 0.67 0.970081
Target:  5'- cGCccagUGGUCGcCGUCGCcgccCGGcucgcuGCGCCa -3'
miRNA:   3'- -CGa---ACCAGU-GCAGCGc---GCCuu----UGUGG- -5'
6887 5' -52.5 NC_001875.2 + 75374 0.67 0.970081
Target:  5'- cGCUgaccaaCACG-CGCGCGGAcccCGCCa -3'
miRNA:   3'- -CGAacca--GUGCaGCGCGCCUuu-GUGG- -5'
6887 5' -52.5 NC_001875.2 + 37044 0.67 0.966995
Target:  5'- uGCacGG-CGCGUgcacgCGCGCGGAcGCgGCCa -3'
miRNA:   3'- -CGaaCCaGUGCA-----GCGCGCCUuUG-UGG- -5'
6887 5' -52.5 NC_001875.2 + 105204 0.67 0.966995
Target:  5'- ---gGGUUucccuACGUgGUGUGGAGAgACCg -3'
miRNA:   3'- cgaaCCAG-----UGCAgCGCGCCUUUgUGG- -5'
6887 5' -52.5 NC_001875.2 + 33480 0.67 0.966995
Target:  5'- --gUGG-CGCGcCGCGCgcugGGguGCGCCa -3'
miRNA:   3'- cgaACCaGUGCaGCGCG----CCuuUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 28380 0.67 0.966995
Target:  5'- ---aGGUCguACGUCGCGgCGuGcacGACGCCg -3'
miRNA:   3'- cgaaCCAG--UGCAGCGC-GC-Cu--UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 83505 0.67 0.966995
Target:  5'- cGC-UGGUC-C-UUGUGCGGGuucGACGCCc -3'
miRNA:   3'- -CGaACCAGuGcAGCGCGCCU---UUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 53526 0.67 0.966995
Target:  5'- uUUUGGcgCACGUCGUGCGcuaccAGCGCg -3'
miRNA:   3'- cGAACCa-GUGCAGCGCGCcu---UUGUGg -5'
6887 5' -52.5 NC_001875.2 + 119918 0.67 0.963691
Target:  5'- ---cGG-CGCGcCGCGCGcaAAACACCu -3'
miRNA:   3'- cgaaCCaGUGCaGCGCGCc-UUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 39662 0.67 0.963691
Target:  5'- aGUUUGGgccgGCGgCGCGCGGcggcGAGCugCu -3'
miRNA:   3'- -CGAACCag--UGCaGCGCGCC----UUUGugG- -5'
6887 5' -52.5 NC_001875.2 + 68566 0.67 0.963691
Target:  5'- gGCggcGGUCGCGcacCGCGUGG---CGCCg -3'
miRNA:   3'- -CGaa-CCAGUGCa--GCGCGCCuuuGUGG- -5'
6887 5' -52.5 NC_001875.2 + 51575 0.67 0.963691
Target:  5'- ---cGuUCACGaCGCGCGGcGugGCCa -3'
miRNA:   3'- cgaaCcAGUGCaGCGCGCCuUugUGG- -5'
6887 5' -52.5 NC_001875.2 + 85214 0.67 0.960162
Target:  5'- ---cGGgC-CGcCGCGCGGuAGCGCCg -3'
miRNA:   3'- cgaaCCaGuGCaGCGCGCCuUUGUGG- -5'
6887 5' -52.5 NC_001875.2 + 35391 0.67 0.960162
Target:  5'- cGCUgcuGUC-CGUggCGCGCGcGAgcGACGCCg -3'
miRNA:   3'- -CGAac-CAGuGCA--GCGCGC-CU--UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.