miRNA display CGI


Results 21 - 40 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6888 5' -60.9 NC_001875.2 + 102993 0.66 0.655226
Target:  5'- --cGGGCAcguGGUGGCGUGCggCAaguGCGCUg -3'
miRNA:   3'- caaCCCGU---CCGCCGCGCGg-GU---UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 40918 0.66 0.655226
Target:  5'- -cUGGccaucaccaccGCAGGCuGCGUGCCCGucaacAUGCCc -3'
miRNA:   3'- caACC-----------CGUCCGcCGCGCGGGU-----UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 29261 0.66 0.655226
Target:  5'- --cGGGUGcGCGGC-CGCCgAccGCGCCg -3'
miRNA:   3'- caaCCCGUcCGCCGcGCGGgU--UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 119531 0.66 0.649206
Target:  5'- --cGGGCgcguugaccacgcacAcGGCGGCGUGCCgGcuGCACa -3'
miRNA:   3'- caaCCCG---------------U-CCGCCGCGCGGgU--UGUGg -5'
6888 5' -60.9 NC_001875.2 + 63206 0.66 0.646195
Target:  5'- --cGGGCAGcGCagcuuuacgucgcccGCGuCGCCCGuCACCa -3'
miRNA:   3'- caaCCCGUC-CGc--------------CGC-GCGGGUuGUGG- -5'
6888 5' -60.9 NC_001875.2 + 76499 0.66 0.645191
Target:  5'- --cGaGGCGGcgcccccgaaGCGGCGCGUCau-CACCg -3'
miRNA:   3'- caaC-CCGUC----------CGCCGCGCGGguuGUGG- -5'
6888 5' -60.9 NC_001875.2 + 63123 0.66 0.645191
Target:  5'- -aUGGGauagcGGCcgGGCGCGCggCCGGCGCa -3'
miRNA:   3'- caACCCgu---CCG--CCGCGCG--GGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 129921 0.66 0.645191
Target:  5'- cGUUGuuaauuGGC-GGCGGCaUGCUCGugGCCa -3'
miRNA:   3'- -CAAC------CCGuCCGCCGcGCGGGUugUGG- -5'
6888 5' -60.9 NC_001875.2 + 10404 0.66 0.645191
Target:  5'- aGUUGcGGUAaa-GGCGCGCCguGCAUCc -3'
miRNA:   3'- -CAAC-CCGUccgCCGCGCGGguUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 124551 0.66 0.645191
Target:  5'- --gGGGUcGGCGGCGgGgUCGcuuuggcggcACACCg -3'
miRNA:   3'- caaCCCGuCCGCCGCgCgGGU----------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 38474 0.66 0.645191
Target:  5'- aUUGGuGCAG-C-GCGUGCUCGACACUc -3'
miRNA:   3'- cAACC-CGUCcGcCGCGCGGGUUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 112724 0.66 0.645191
Target:  5'- --cGuGGUAGGCGcgucGCGCGCacagCAACACg -3'
miRNA:   3'- caaC-CCGUCCGC----CGCGCGg---GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 33788 0.66 0.645191
Target:  5'- --cGGGguGGUcuaGGCGCacuuGCCCGucgGCGCa -3'
miRNA:   3'- caaCCCguCCG---CCGCG----CGGGU---UGUGg -5'
6888 5' -60.9 NC_001875.2 + 79311 0.66 0.645191
Target:  5'- -cUGGcGCgugcuuucgaugAGcGCGGCGCuGCCUuuGGCGCCg -3'
miRNA:   3'- caACC-CG------------UC-CGCCGCG-CGGG--UUGUGG- -5'
6888 5' -60.9 NC_001875.2 + 42925 0.66 0.642178
Target:  5'- -gUGGGCGucgcagucaaacguGGCGuGCGUcagcaGCCCGcgcagcGCGCCa -3'
miRNA:   3'- caACCCGU--------------CCGC-CGCG-----CGGGU------UGUGG- -5'
6888 5' -60.9 NC_001875.2 + 74350 0.66 0.641173
Target:  5'- -gUGGGCuuucaaacuagacGGCGuGCGCGgCCgCGGCGCg -3'
miRNA:   3'- caACCCGu------------CCGC-CGCGC-GG-GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 27996 0.66 0.639164
Target:  5'- ---uGGCuuuccaaacugcccaGGGUGGCGaagGCCCAGCACg -3'
miRNA:   3'- caacCCG---------------UCCGCCGCg--CGGGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 29426 0.66 0.635145
Target:  5'- ---cGGCAacGGCGaGCGCGaCgCCGACACg -3'
miRNA:   3'- caacCCGU--CCGC-CGCGC-G-GGUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 44551 0.66 0.635145
Target:  5'- cGUUGGGCA-GCcGCGCGUUgCGACAUa -3'
miRNA:   3'- -CAACCCGUcCGcCGCGCGG-GUUGUGg -5'
6888 5' -60.9 NC_001875.2 + 86383 0.66 0.635145
Target:  5'- --cGcGGCu-GCGG-GCGCCgAGCGCCg -3'
miRNA:   3'- caaC-CCGucCGCCgCGCGGgUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.