Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
689 | 5' | -55.1 | AC_000018.1 | + | 18820 | 1.13 | 0.000307 |
Target: 5'- cCGACCGUAGCCAGCGACUGAUGCUGCg -3' miRNA: 3'- -GCUGGCAUCGGUCGCUGACUACGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 3720 | 0.73 | 0.236641 |
Target: 5'- gCGGCagcaGUAGCggCGGCGGCUGcaGCUGCa -3' miRNA: 3'- -GCUGg---CAUCG--GUCGCUGACuaCGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 12953 | 0.7 | 0.373122 |
Target: 5'- gCGACCGUGuCUAGCuuGCUGAucccaacucccgccUGCUGCu -3' miRNA: 3'- -GCUGGCAUcGGUCGc-UGACU--------------ACGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 23624 | 0.69 | 0.413439 |
Target: 5'- gGGCagagGUGGa-GGCGACUGAgauggGCUGCg -3' miRNA: 3'- gCUGg---CAUCggUCGCUGACUa----CGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 16280 | 0.68 | 0.452241 |
Target: 5'- -cGCCGUGGCCGcgcgccuGCGGgacCUGccGCUGCu -3' miRNA: 3'- gcUGGCAUCGGU-------CGCU---GACuaCGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 11469 | 0.68 | 0.457359 |
Target: 5'- aGACCGUGGCgCAgcucGCGACccgcguuaaaucgaGAUGCUcGCa -3' miRNA: 3'- gCUGGCAUCG-GU----CGCUGa-------------CUACGA-CG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 13613 | 0.67 | 0.527561 |
Target: 5'- -cGCUGU--CCGGaaCGGCUGGUGCUGCc -3' miRNA: 3'- gcUGGCAucGGUC--GCUGACUACGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 15574 | 0.67 | 0.51664 |
Target: 5'- aCGugCGUgAGCgaAGUGGCUGucggaGCUGCu -3' miRNA: 3'- -GCugGCA-UCGg-UCGCUGACua---CGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 22682 | 0.66 | 0.605935 |
Target: 5'- cCGACCa-AGCCAG-GA-UGAUGCUGa -3' miRNA: 3'- -GCUGGcaUCGGUCgCUgACUACGACg -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 4472 | 0.66 | 0.605935 |
Target: 5'- gGGCCGUGGgCAGCGGCacggGCg-- -3' miRNA: 3'- gCUGGCAUCgGUCGCUGacuaCGacg -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 10418 | 0.66 | 0.594591 |
Target: 5'- uCGucuCCGUGGCCuggaggcuaAGCGAacgGGUuggGCUGCg -3' miRNA: 3'- -GCu--GGCAUCGG---------UCGCUga-CUA---CGACG- -5' |
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689 | 5' | -55.1 | AC_000018.1 | + | 17353 | 0.66 | 0.617303 |
Target: 5'- gCGACUugcagGUGGUuugCGGCGGCgagaGGUGUUGCu -3' miRNA: 3'- -GCUGG-----CAUCG---GUCGCUGa---CUACGACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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