miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6890 3' -52.4 NC_001875.2 + 20799 0.66 0.972306
Target:  5'- cGAcGCGCagUGCGCGGgCGUCgUCg--- -3'
miRNA:   3'- aCUaCGCG--ACGUGCC-GCAGaAGaaac -5'
6890 3' -52.4 NC_001875.2 + 19020 0.66 0.969308
Target:  5'- ---cGCGCuuugcacgUGCGCGGCGUUUUUa--- -3'
miRNA:   3'- acuaCGCG--------ACGUGCCGCAGAAGaaac -5'
6890 3' -52.4 NC_001875.2 + 57738 0.66 0.969308
Target:  5'- ---cGCGCcaGCACGGCGUCg------ -3'
miRNA:   3'- acuaCGCGa-CGUGCCGCAGaagaaac -5'
6890 3' -52.4 NC_001875.2 + 121746 0.66 0.969308
Target:  5'- uUGuUGCGCgGCAuguCGGCGUCga-UUUGc -3'
miRNA:   3'- -ACuACGCGaCGU---GCCGCAGaagAAAC- -5'
6890 3' -52.4 NC_001875.2 + 54890 0.66 0.966085
Target:  5'- --cUGgGCUcGCACGGCGcgUCUUCg--- -3'
miRNA:   3'- acuACgCGA-CGUGCCGC--AGAAGaaac -5'
6890 3' -52.4 NC_001875.2 + 31557 0.66 0.962631
Target:  5'- ---cGCGCUGCAgguugggccCGGCGgCUUCcUUGc -3'
miRNA:   3'- acuaCGCGACGU---------GCCGCaGAAGaAAC- -5'
6890 3' -52.4 NC_001875.2 + 73710 0.66 0.958939
Target:  5'- cGGUGCGCUGCGcCGGCa--------- -3'
miRNA:   3'- aCUACGCGACGU-GCCGcagaagaaac -5'
6890 3' -52.4 NC_001875.2 + 18674 0.66 0.955005
Target:  5'- cGGUGCgGCUGCugGGCGa-------- -3'
miRNA:   3'- aCUACG-CGACGugCCGCagaagaaac -5'
6890 3' -52.4 NC_001875.2 + 7002 0.66 0.955005
Target:  5'- gGGUGUGCUGCuggccgGCGGCGcguaUCUgacCUUUa -3'
miRNA:   3'- aCUACGCGACG------UGCCGC----AGAa--GAAAc -5'
6890 3' -52.4 NC_001875.2 + 65807 0.67 0.946388
Target:  5'- cGGUGC-CUGCGCGGCGcCaagcgCUUg- -3'
miRNA:   3'- aCUACGcGACGUGCCGCaGaa---GAAac -5'
6890 3' -52.4 NC_001875.2 + 43561 0.67 0.946388
Target:  5'- -cGUG-GCgGgGCGGCGUCUUCUUc- -3'
miRNA:   3'- acUACgCGaCgUGCCGCAGAAGAAac -5'
6890 3' -52.4 NC_001875.2 + 37118 0.67 0.941698
Target:  5'- cGcgGCGCcGCGcCGGCGUUUgcgUCUUUc -3'
miRNA:   3'- aCuaCGCGaCGU-GCCGCAGA---AGAAAc -5'
6890 3' -52.4 NC_001875.2 + 73373 0.67 0.941698
Target:  5'- aUGGUGCGCuUGUACuGGUugucGUCUUCg--- -3'
miRNA:   3'- -ACUACGCG-ACGUG-CCG----CAGAAGaaac -5'
6890 3' -52.4 NC_001875.2 + 84370 0.67 0.941698
Target:  5'- aGGUGCGCgGCcugccgggGCGGCGUCg------ -3'
miRNA:   3'- aCUACGCGaCG--------UGCCGCAGaagaaac -5'
6890 3' -52.4 NC_001875.2 + 34270 0.67 0.93675
Target:  5'- -cGUGCGUgucaCACGGCGUCaacgCUUUGu -3'
miRNA:   3'- acUACGCGac--GUGCCGCAGaa--GAAAC- -5'
6890 3' -52.4 NC_001875.2 + 116491 0.67 0.93675
Target:  5'- ---aGUGCUGCacGCGGCGUUguucgggCUUUGc -3'
miRNA:   3'- acuaCGCGACG--UGCCGCAGaa-----GAAAC- -5'
6890 3' -52.4 NC_001875.2 + 73894 0.67 0.93675
Target:  5'- cGAUuaGCGCcgGCAUGGCGUCggggUCc--- -3'
miRNA:   3'- aCUA--CGCGa-CGUGCCGCAGa---AGaaac -5'
6890 3' -52.4 NC_001875.2 + 109643 0.68 0.920344
Target:  5'- ---cGCGCUGCccaacGCGGCGUCauUUCg--- -3'
miRNA:   3'- acuaCGCGACG-----UGCCGCAG--AAGaaac -5'
6890 3' -52.4 NC_001875.2 + 18539 0.68 0.920344
Target:  5'- cUGGUGUacguGCUGCugGGCGUgggugUCUUg- -3'
miRNA:   3'- -ACUACG----CGACGugCCGCAga---AGAAac -5'
6890 3' -52.4 NC_001875.2 + 67748 0.68 0.920344
Target:  5'- uUGAUGuCGCUGUACGGUcuGUCggCg--- -3'
miRNA:   3'- -ACUAC-GCGACGUGCCG--CAGaaGaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.