miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6890 5' -53.4 NC_001875.2 + 46514 0.66 0.94711
Target:  5'- cGCGGCG--GGCGgGGcgaGaGCGCCCGCg -3'
miRNA:   3'- uUGUUGUauUUGCgCCa--C-CGCGGGUG- -5'
6890 5' -53.4 NC_001875.2 + 69344 0.66 0.94711
Target:  5'- cGCGACG-AAACGCGcagucagcggcGU-GCGCCCGCu -3'
miRNA:   3'- uUGUUGUaUUUGCGC-----------CAcCGCGGGUG- -5'
6890 5' -53.4 NC_001875.2 + 65358 0.66 0.94711
Target:  5'- -gUAGCucuUAAGCGUGGUgGGCGCaaACg -3'
miRNA:   3'- uuGUUGu--AUUUGCGCCA-CCGCGggUG- -5'
6890 5' -53.4 NC_001875.2 + 37093 0.66 0.94711
Target:  5'- cGACAccgccGCGUGGGugUGCGGgcgcGGCGCCgCGCc -3'
miRNA:   3'- -UUGU-----UGUAUUU--GCGCCa---CCGCGG-GUG- -5'
6890 5' -53.4 NC_001875.2 + 90821 0.66 0.94711
Target:  5'- cACGGCc---ACGCGGuUGGCGaCCUGCu -3'
miRNA:   3'- uUGUUGuauuUGCGCC-ACCGC-GGGUG- -5'
6890 5' -53.4 NC_001875.2 + 109986 0.66 0.94711
Target:  5'- uGCcACGUAcGCGCGGUcgguGGCGUUgACg -3'
miRNA:   3'- uUGuUGUAUuUGCGCCA----CCGCGGgUG- -5'
6890 5' -53.4 NC_001875.2 + 38560 0.66 0.94711
Target:  5'- uGCuGCGUcgGCGCGGc-GUGCCCAUc -3'
miRNA:   3'- uUGuUGUAuuUGCGCCacCGCGGGUG- -5'
6890 5' -53.4 NC_001875.2 + 65759 0.66 0.942464
Target:  5'- -uCGGCGUAuucguGCGCGGcgGGCGgCgGCg -3'
miRNA:   3'- uuGUUGUAUu----UGCGCCa-CCGCgGgUG- -5'
6890 5' -53.4 NC_001875.2 + 77147 0.66 0.942464
Target:  5'- uAGCAACA----UGUGG-GGCGCCCu- -3'
miRNA:   3'- -UUGUUGUauuuGCGCCaCCGCGGGug -5'
6890 5' -53.4 NC_001875.2 + 32786 0.66 0.942464
Target:  5'- cGCGGCGUGGGCGgGcGccGCGCCgGCa -3'
miRNA:   3'- uUGUUGUAUUUGCgC-CacCGCGGgUG- -5'
6890 5' -53.4 NC_001875.2 + 69561 0.66 0.942464
Target:  5'- uGCGACuAUGAugGCGGaccugacaacgGGCGCUgACc -3'
miRNA:   3'- uUGUUG-UAUUugCGCCa----------CCGCGGgUG- -5'
6890 5' -53.4 NC_001875.2 + 53919 0.66 0.942464
Target:  5'- cGCGcCGUugcGGGCGCGuUGGCGCgCACg -3'
miRNA:   3'- uUGUuGUA---UUUGCGCcACCGCGgGUG- -5'
6890 5' -53.4 NC_001875.2 + 16359 0.66 0.942464
Target:  5'- aGugAACAaGGACGCcaauGGccGCGCCCGCu -3'
miRNA:   3'- -UugUUGUaUUUGCG----CCacCGCGGGUG- -5'
6890 5' -53.4 NC_001875.2 + 52497 0.66 0.942464
Target:  5'- cGACAugGUAAACaGCGGcgccaaaGGCaGCgCCGCg -3'
miRNA:   3'- -UUGUugUAUUUG-CGCCa------CCG-CG-GGUG- -5'
6890 5' -53.4 NC_001875.2 + 35828 0.66 0.942464
Target:  5'- cACAGCAUGGGCGUcuGGUGGC-CUUuuGCa -3'
miRNA:   3'- uUGUUGUAUUUGCG--CCACCGcGGG--UG- -5'
6890 5' -53.4 NC_001875.2 + 101942 0.66 0.941504
Target:  5'- cAGCAGCAggcccagagaaaAGGCGcCGGUGGCGaaCGCg -3'
miRNA:   3'- -UUGUUGUa-----------UUUGC-GCCACCGCggGUG- -5'
6890 5' -53.4 NC_001875.2 + 90961 0.66 0.937561
Target:  5'- ---cGCG-AAGCGCGcGUgcaccaggauGGCGCCCGCg -3'
miRNA:   3'- uuguUGUaUUUGCGC-CA----------CCGCGGGUG- -5'
6890 5' -53.4 NC_001875.2 + 88277 0.66 0.937561
Target:  5'- -cCAGCAUGAcgcuggcgggcgACGCGGUGauUGUCCGCa -3'
miRNA:   3'- uuGUUGUAUU------------UGCGCCACc-GCGGGUG- -5'
6890 5' -53.4 NC_001875.2 + 3222 0.66 0.937561
Target:  5'- gGAUGGCGUGGGCGCGuUGGCGUUg-- -3'
miRNA:   3'- -UUGUUGUAUUUGCGCcACCGCGGgug -5'
6890 5' -53.4 NC_001875.2 + 58520 0.66 0.937561
Target:  5'- aAGgGGCGUAaAGCGCauucUGGUGCCCACc -3'
miRNA:   3'- -UUgUUGUAU-UUGCGcc--ACCGCGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.