miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6891 3' -60 NC_001875.2 + 94799 0.66 0.727052
Target:  5'- cGCGCGCGUGCagcgcc-GUGCacgGCCa -3'
miRNA:   3'- -CGCGCGCACGgguaccaCACGga-CGG- -5'
6891 3' -60 NC_001875.2 + 113371 0.66 0.719267
Target:  5'- uGCgGCGCG-GCgCAaaaaaGGUGUGCCgcgGCg -3'
miRNA:   3'- -CG-CGCGCaCGgGUa----CCACACGGa--CGg -5'
6891 3' -60 NC_001875.2 + 1398 0.66 0.719267
Target:  5'- uGCGUcaGCGgcGCCC-UGGUGUGCUauuuuuagcggUGCg -3'
miRNA:   3'- -CGCG--CGCa-CGGGuACCACACGG-----------ACGg -5'
6891 3' -60 NC_001875.2 + 9635 0.66 0.719267
Target:  5'- uGCGUGCGcGCgCCGUGcGUGUuucGCgaGCUu -3'
miRNA:   3'- -CGCGCGCaCG-GGUAC-CACA---CGgaCGG- -5'
6891 3' -60 NC_001875.2 + 9923 0.66 0.709471
Target:  5'- gGCGCGCGgGCCgCAaguauucuagcGGUGcUGCCcacGCCg -3'
miRNA:   3'- -CGCGCGCaCGG-GUa----------CCAC-ACGGa--CGG- -5'
6891 3' -60 NC_001875.2 + 16260 0.66 0.709471
Target:  5'- aCGCGCGUGCgucaCGUGGUGc-CCgGCg -3'
miRNA:   3'- cGCGCGCACGg---GUACCACacGGaCGg -5'
6891 3' -60 NC_001875.2 + 38569 0.66 0.709471
Target:  5'- gGCGCgGCGUGCCCAU------CCUGCUc -3'
miRNA:   3'- -CGCG-CGCACGGGUAccacacGGACGG- -5'
6891 3' -60 NC_001875.2 + 79813 0.66 0.709471
Target:  5'- cCGCuugaaCGUGCCCGgcaUGGUgGUGCCaGCa -3'
miRNA:   3'- cGCGc----GCACGGGU---ACCA-CACGGaCGg -5'
6891 3' -60 NC_001875.2 + 63696 0.66 0.709471
Target:  5'- gGCGCGCacgagGUGCgCGUGau-UGCCUcGCCg -3'
miRNA:   3'- -CGCGCG-----CACGgGUACcacACGGA-CGG- -5'
6891 3' -60 NC_001875.2 + 111570 0.66 0.708488
Target:  5'- uGUGCGCcuuuaccGUGuCCCAcaUGGUGggGCUguuggGCCa -3'
miRNA:   3'- -CGCGCG-------CAC-GGGU--ACCACa-CGGa----CGG- -5'
6891 3' -60 NC_001875.2 + 100300 0.66 0.703562
Target:  5'- uGCaGCGCGUGCaaGUGGUGccguucaacgacccGCC-GCCu -3'
miRNA:   3'- -CG-CGCGCACGggUACCACa-------------CGGaCGG- -5'
6891 3' -60 NC_001875.2 + 89028 0.66 0.702575
Target:  5'- aGCGCaaguugucauucaGCGUGCCCGUGcGcgggcuggucaaaauUGUGCgCacgGCCg -3'
miRNA:   3'- -CGCG-------------CGCACGGGUAC-C---------------ACACG-Ga--CGG- -5'
6891 3' -60 NC_001875.2 + 16146 0.66 0.699611
Target:  5'- cCGCGCaacCCCcUGGaaUGCCUGCCc -3'
miRNA:   3'- cGCGCGcacGGGuACCacACGGACGG- -5'
6891 3' -60 NC_001875.2 + 110507 0.66 0.699611
Target:  5'- -aGCaCGUcGCCCA-GGUG-GCCgcggGCCa -3'
miRNA:   3'- cgCGcGCA-CGGGUaCCACaCGGa---CGG- -5'
6891 3' -60 NC_001875.2 + 16207 0.66 0.696643
Target:  5'- cCGUGCG-GCCCGUGuuugagucgggcgaGUGUGaCUGCg -3'
miRNA:   3'- cGCGCGCaCGGGUAC--------------CACACgGACGg -5'
6891 3' -60 NC_001875.2 + 102975 0.66 0.689697
Target:  5'- cGUGUGCuuuGUGCCCugcgggcacGUGGUG-GCgUGCg -3'
miRNA:   3'- -CGCGCG---CACGGG---------UACCACaCGgACGg -5'
6891 3' -60 NC_001875.2 + 91420 0.66 0.688703
Target:  5'- gGCGCGCGUcaGCCCcucGGUGUugaccacGUCcgcGCCa -3'
miRNA:   3'- -CGCGCGCA--CGGGua-CCACA-------CGGa--CGG- -5'
6891 3' -60 NC_001875.2 + 68978 0.66 0.682729
Target:  5'- uGCGCGUcaacgaguuuguggaGUGCCgcgggggcaagcaCGUGGUGgcGCgCUGCCc -3'
miRNA:   3'- -CGCGCG---------------CACGG-------------GUACCACa-CG-GACGG- -5'
6891 3' -60 NC_001875.2 + 101169 0.66 0.678738
Target:  5'- cGUGCGCGUGgCgcUGGUcaauuacGUGCCggcGCCc -3'
miRNA:   3'- -CGCGCGCACgGguACCA-------CACGGa--CGG- -5'
6891 3' -60 NC_001875.2 + 89268 0.67 0.669738
Target:  5'- cGCGCGCGUGCgCCGaccUGGcGcgGCUggGCg -3'
miRNA:   3'- -CGCGCGCACG-GGU---ACCaCa-CGGa-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.