miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6891 5' -53.6 NC_001875.2 + 122064 0.66 0.951738
Target:  5'- aGUGcCCGGaugUGCCGCGUGCGCu-- -3'
miRNA:   3'- -CGCuGGUCaaaGUGGUGCGCGCGuuu -5'
6891 5' -53.6 NC_001875.2 + 92065 0.66 0.951738
Target:  5'- uCGAacaCGGUUUCGgcguuCCAgGCGCGCGu- -3'
miRNA:   3'- cGCUg--GUCAAAGU-----GGUgCGCGCGUuu -5'
6891 5' -53.6 NC_001875.2 + 49906 0.66 0.951738
Target:  5'- cGCGugCuaaucagcuGGUcgUCggaGCCGCGCGCGCu-- -3'
miRNA:   3'- -CGCugG---------UCAa-AG---UGGUGCGCGCGuuu -5'
6891 5' -53.6 NC_001875.2 + 44525 0.66 0.951738
Target:  5'- uGCGGCUucgUUCACagcaGCGuCGCGCGGc -3'
miRNA:   3'- -CGCUGGucaAAGUGg---UGC-GCGCGUUu -5'
6891 5' -53.6 NC_001875.2 + 128306 0.66 0.951738
Target:  5'- gGCG-CCGGUgacgugCGCCAaaUGCGCAAAa -3'
miRNA:   3'- -CGCuGGUCAaa----GUGGUgcGCGCGUUU- -5'
6891 5' -53.6 NC_001875.2 + 378 0.66 0.951738
Target:  5'- gGCGuACCAGUcgaaUgACCGCGCGUaguuguggcgGCGAAu -3'
miRNA:   3'- -CGC-UGGUCAa---AgUGGUGCGCG----------CGUUU- -5'
6891 5' -53.6 NC_001875.2 + 113539 0.66 0.951738
Target:  5'- gGCGGCgGG----GCCAauaaGCGCGCGAAg -3'
miRNA:   3'- -CGCUGgUCaaagUGGUg---CGCGCGUUU- -5'
6891 5' -53.6 NC_001875.2 + 104512 0.66 0.951738
Target:  5'- gGCGAaacgccguCCGGcUUUugCACGCGCaugGCAAAc -3'
miRNA:   3'- -CGCU--------GGUCaAAGugGUGCGCG---CGUUU- -5'
6891 5' -53.6 NC_001875.2 + 59853 0.66 0.951738
Target:  5'- gGCGACUAca---GCgACGCGUGCAAGc -3'
miRNA:   3'- -CGCUGGUcaaagUGgUGCGCGCGUUU- -5'
6891 5' -53.6 NC_001875.2 + 54577 0.66 0.951738
Target:  5'- gGCGGCCGc-UUCGCCcgGCGgCGCGCc-- -3'
miRNA:   3'- -CGCUGGUcaAAGUGG--UGC-GCGCGuuu -5'
6891 5' -53.6 NC_001875.2 + 61599 0.66 0.951316
Target:  5'- aGCGcCCGa--UCACCGCGCGCuggcuugGCGAGa -3'
miRNA:   3'- -CGCuGGUcaaAGUGGUGCGCG-------CGUUU- -5'
6891 5' -53.6 NC_001875.2 + 81907 0.66 0.950034
Target:  5'- aCGACCAGcugauuaGCGCGCGCGGc -3'
miRNA:   3'- cGCUGGUCaaaguggUGCGCGCGUUu -5'
6891 5' -53.6 NC_001875.2 + 110027 0.66 0.949602
Target:  5'- uCGACCAGUggcgcgacaacaaggUUAUCGuuccggaacccguguCGCGCGCAGAg -3'
miRNA:   3'- cGCUGGUCAa--------------AGUGGU---------------GCGCGCGUUU- -5'
6891 5' -53.6 NC_001875.2 + 9066 0.66 0.947404
Target:  5'- cGCG-CCGGUUUcCGCCAacUGCGCcugugGCGAGu -3'
miRNA:   3'- -CGCuGGUCAAA-GUGGU--GCGCG-----CGUUU- -5'
6891 5' -53.6 NC_001875.2 + 57323 0.66 0.947404
Target:  5'- gGCGACgCAauuGUUgcggcagCGCUGCGCGCgGCGAAa -3'
miRNA:   3'- -CGCUG-GU---CAAa------GUGGUGCGCG-CGUUU- -5'
6891 5' -53.6 NC_001875.2 + 17091 0.66 0.947404
Target:  5'- -aGGCCGGgcaaGCCGCGCGC-CAc- -3'
miRNA:   3'- cgCUGGUCaaagUGGUGCGCGcGUuu -5'
6891 5' -53.6 NC_001875.2 + 113357 0.66 0.947404
Target:  5'- cGCGGCUGcg-UCGCUgcgGCGCGgCGCAAAa -3'
miRNA:   3'- -CGCUGGUcaaAGUGG---UGCGC-GCGUUU- -5'
6891 5' -53.6 NC_001875.2 + 12766 0.66 0.947404
Target:  5'- gGCGguuguuguccaGCCGGgg-CGCCGCGCacauGCGCAc- -3'
miRNA:   3'- -CGC-----------UGGUCaaaGUGGUGCG----CGCGUuu -5'
6891 5' -53.6 NC_001875.2 + 58740 0.66 0.946957
Target:  5'- aGCGGCCacgauugAGgagCugUAUGCGCGCGu- -3'
miRNA:   3'- -CGCUGG-------UCaaaGugGUGCGCGCGUuu -5'
6891 5' -53.6 NC_001875.2 + 31876 0.66 0.946957
Target:  5'- uGUGGCCAacaguccGUggUUCACCAgCGCGUugGCAAAg -3'
miRNA:   3'- -CGCUGGU-------CA--AAGUGGU-GCGCG--CGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.