miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6892 5' -55.7 NC_001875.2 + 39634 0.66 0.905314
Target:  5'- cGGCAGUcgacGGUGGCGGCGuuuGCGcaauGGcCCGu -3'
miRNA:   3'- -CUGUCG----CCACCGUUGU---UGCu---CCuGGC- -5'
6892 5' -55.7 NC_001875.2 + 108736 0.66 0.905314
Target:  5'- cGCAGCGGccuuUGGCGgggcagcugcacGCGGCGcGGGuuGCCGg -3'
miRNA:   3'- cUGUCGCC----ACCGU------------UGUUGC-UCC--UGGC- -5'
6892 5' -55.7 NC_001875.2 + 49353 0.66 0.905314
Target:  5'- gGGCGGCGGgccgugGuGCAACAugcgGCGGcGGuACCGu -3'
miRNA:   3'- -CUGUCGCCa-----C-CGUUGU----UGCU-CC-UGGC- -5'
6892 5' -55.7 NC_001875.2 + 30667 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 30601 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 30535 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 30403 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 48015 0.66 0.898916
Target:  5'- aGAUcGUGGUGGCGGCccACGuGGccGCCGc -3'
miRNA:   3'- -CUGuCGCCACCGUUGu-UGCuCC--UGGC- -5'
6892 5' -55.7 NC_001875.2 + 30469 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 30271 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 1427 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 30337 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 1331 0.66 0.898916
Target:  5'- -uUAGCGGUGcGuCAGCGGCGAcccugcuuuucgGGugCGa -3'
miRNA:   3'- cuGUCGCCAC-C-GUUGUUGCU------------CCugGC- -5'
6892 5' -55.7 NC_001875.2 + 35493 0.66 0.892282
Target:  5'- cGugAGCGGcaugacaacUGcCGGCAACGGGcGGCCGc -3'
miRNA:   3'- -CugUCGCC---------ACcGUUGUUGCUC-CUGGC- -5'
6892 5' -55.7 NC_001875.2 + 42356 0.66 0.885414
Target:  5'- --aAGCGGUuGCGGCG-CGAGGGCg- -3'
miRNA:   3'- cugUCGCCAcCGUUGUuGCUCCUGgc -5'
6892 5' -55.7 NC_001875.2 + 1024 0.66 0.884714
Target:  5'- uGCAGCGcGUGGCGgggcccgaggcgcACAGCGuuGGGCg- -3'
miRNA:   3'- cUGUCGC-CACCGU-------------UGUUGCu-CCUGgc -5'
6892 5' -55.7 NC_001875.2 + 76466 0.66 0.873951
Target:  5'- cGACGGCGccGGCAaaacggccgcggacgACGACGAGGcggcGCCc -3'
miRNA:   3'- -CUGUCGCcaCCGU---------------UGUUGCUCC----UGGc -5'
6892 5' -55.7 NC_001875.2 + 68544 0.66 0.870252
Target:  5'- aGCAGCGGUuugccgccgcGGCGGCGGCGGucgcgcaccgcguGGcGCCGc -3'
miRNA:   3'- cUGUCGCCA----------CCGUUGUUGCU-------------CC-UGGC- -5'
6892 5' -55.7 NC_001875.2 + 7402 0.66 0.868757
Target:  5'- cGAC-GCGGUcgcaaaacauauugGGCccAACGACGAGGGCa- -3'
miRNA:   3'- -CUGuCGCCA--------------CCG--UUGUUGCUCCUGgc -5'
6892 5' -55.7 NC_001875.2 + 109132 0.66 0.868757
Target:  5'- cGGCGGCGGUcuuGGCGacgcagauaggcaaGCGcuaaACGAGGugCu -3'
miRNA:   3'- -CUGUCGCCA---CCGU--------------UGU----UGCUCCugGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.