miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6894 3' -59.7 NC_001875.2 + 23180 0.66 0.722986
Target:  5'- gGCUGCGGGCacGGCCGUUgGCGgUUGc- -3'
miRNA:   3'- -UGACGCUCGc-CCGGCAG-CGCaAGCaa -5'
6894 3' -59.7 NC_001875.2 + 9632 0.66 0.722986
Target:  5'- aGCUGCGuGCGcGcGCCGUgCGUGuUUCGc- -3'
miRNA:   3'- -UGACGCuCGC-C-CGGCA-GCGC-AAGCaa -5'
6894 3' -59.7 NC_001875.2 + 117938 0.66 0.722986
Target:  5'- gGCcgGCGuGCGcGCCGcCGCGUUUGg- -3'
miRNA:   3'- -UGa-CGCuCGCcCGGCaGCGCAAGCaa -5'
6894 3' -59.7 NC_001875.2 + 114241 0.66 0.713155
Target:  5'- cGCUG-GAcGCGGGCCGcagCGUGUaaUCGa- -3'
miRNA:   3'- -UGACgCU-CGCCCGGCa--GCGCA--AGCaa -5'
6894 3' -59.7 NC_001875.2 + 16239 0.66 0.713155
Target:  5'- gACUGCG-GCGacgaGGCCGUcacgCGCGUgCGUc -3'
miRNA:   3'- -UGACGCuCGC----CCGGCA----GCGCAaGCAa -5'
6894 3' -59.7 NC_001875.2 + 113342 0.66 0.713155
Target:  5'- -gUGCG-GCGGGUCGggCGCGgcugCGUc -3'
miRNA:   3'- ugACGCuCGCCCGGCa-GCGCaa--GCAa -5'
6894 3' -59.7 NC_001875.2 + 2462 0.66 0.683292
Target:  5'- aAUUGCGcGCGGGUCGgCGCuuuUUCGUa -3'
miRNA:   3'- -UGACGCuCGCCCGGCaGCGc--AAGCAa -5'
6894 3' -59.7 NC_001875.2 + 84209 0.66 0.683292
Target:  5'- aGCUGCcGGUaguaGGGCCGcgCGCGcUCGUc -3'
miRNA:   3'- -UGACGcUCG----CCCGGCa-GCGCaAGCAa -5'
6894 3' -59.7 NC_001875.2 + 66168 0.67 0.642933
Target:  5'- -gUGCuGAuCGGGCUgGUCGCGUUUGUg -3'
miRNA:   3'- ugACG-CUcGCCCGG-CAGCGCAAGCAa -5'
6894 3' -59.7 NC_001875.2 + 98155 0.67 0.632802
Target:  5'- --aGCGGGCGGcGCaCGUCGggcCGUUUGUUu -3'
miRNA:   3'- ugaCGCUCGCC-CG-GCAGC---GCAAGCAA- -5'
6894 3' -59.7 NC_001875.2 + 43852 0.67 0.632802
Target:  5'- gGCUGCuGcGCGGG-CGUCGCGUacgCGg- -3'
miRNA:   3'- -UGACG-CuCGCCCgGCAGCGCAa--GCaa -5'
6894 3' -59.7 NC_001875.2 + 97879 0.68 0.562282
Target:  5'- gGCUGCGcGCcgcacGGGCaCGUUGCGggCGUc -3'
miRNA:   3'- -UGACGCuCG-----CCCG-GCAGCGCaaGCAa -5'
6894 3' -59.7 NC_001875.2 + 65770 0.69 0.552346
Target:  5'- -gUGCGcGGCGGGCgGcggCGCGUcgUCGUUg -3'
miRNA:   3'- ugACGC-UCGCCCGgCa--GCGCA--AGCAA- -5'
6894 3' -59.7 NC_001875.2 + 70827 0.69 0.532642
Target:  5'- --gGCGAGCGcGGCUaaaGCGUUCGUa -3'
miRNA:   3'- ugaCGCUCGC-CCGGcagCGCAAGCAa -5'
6894 3' -59.7 NC_001875.2 + 74366 0.69 0.532642
Target:  5'- gACgGCGuGCGcGGCCGcggCGCGUUCa-- -3'
miRNA:   3'- -UGaCGCuCGC-CCGGCa--GCGCAAGcaa -5'
6894 3' -59.7 NC_001875.2 + 4791 0.69 0.522883
Target:  5'- aAUUGCGuGUGGGCCGUcCGCGguuUCu-- -3'
miRNA:   3'- -UGACGCuCGCCCGGCA-GCGCa--AGcaa -5'
6894 3' -59.7 NC_001875.2 + 39166 0.7 0.465956
Target:  5'- gGCcGCGAgGCGGGCCGgcggUUGCGUggCGUUu -3'
miRNA:   3'- -UGaCGCU-CGCCCGGC----AGCGCAa-GCAA- -5'
6894 3' -59.7 NC_001875.2 + 99911 0.71 0.438717
Target:  5'- aGCgcaaCGAGCGGGCCG-CGCGcgCGg- -3'
miRNA:   3'- -UGac--GCUCGCCCGGCaGCGCaaGCaa -5'
6894 3' -59.7 NC_001875.2 + 67249 0.71 0.412412
Target:  5'- gACUGCGAGgGGgucaaauaaaaGCCGUCGCGcUCa-- -3'
miRNA:   3'- -UGACGCUCgCC-----------CGGCAGCGCaAGcaa -5'
6894 3' -59.7 NC_001875.2 + 53910 0.71 0.395426
Target:  5'- aAUUGUGGGCGcGCCGUUGCGggcgCGUUg -3'
miRNA:   3'- -UGACGCUCGCcCGGCAGCGCaa--GCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.