miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6894 5' -47.6 NC_001875.2 + 1482 0.66 0.999045
Target:  5'- -cAACAAACGcccuuugauCAGCCUGAaaUGGUCu -3'
miRNA:   3'- uaUUGUUUGUu--------GUCGGAUUcgACCGG- -5'
6894 5' -47.6 NC_001875.2 + 73623 0.66 0.999045
Target:  5'- -cGGCGGcuGCGGCGGCUgcGGC-GGCUg -3'
miRNA:   3'- uaUUGUU--UGUUGUCGGauUCGaCCGG- -5'
6894 5' -47.6 NC_001875.2 + 109227 0.66 0.999045
Target:  5'- aGUAGCAugcccagaGACAcgaaaccguACAGCC--GGCcGGCCa -3'
miRNA:   3'- -UAUUGU--------UUGU---------UGUCGGauUCGaCCGG- -5'
6894 5' -47.6 NC_001875.2 + 92966 0.66 0.998824
Target:  5'- uUGACGAACGugAGCUUuuuGUcuUGGCg -3'
miRNA:   3'- uAUUGUUUGUugUCGGAuu-CG--ACCGg -5'
6894 5' -47.6 NC_001875.2 + 111868 0.66 0.998824
Target:  5'- --cGCAcgucAGCAACGGCg-AGGCgccGGCCg -3'
miRNA:   3'- uauUGU----UUGUUGUCGgaUUCGa--CCGG- -5'
6894 5' -47.6 NC_001875.2 + 128029 0.66 0.998824
Target:  5'- --cGCcGACGACGGCCgguggucgacgcUGAGUcgGGCCc -3'
miRNA:   3'- uauUGuUUGUUGUCGG------------AUUCGa-CCGG- -5'
6894 5' -47.6 NC_001875.2 + 33393 0.66 0.998824
Target:  5'- -cAGCAuugcGCggUAGCgcucguggCUGAGCUGGCg -3'
miRNA:   3'- uaUUGUu---UGuuGUCG--------GAUUCGACCGg -5'
6894 5' -47.6 NC_001875.2 + 113213 0.66 0.998824
Target:  5'- -aAACGAcACAACAaCC-GAGCUGcGCCu -3'
miRNA:   3'- uaUUGUU-UGUUGUcGGaUUCGAC-CGG- -5'
6894 5' -47.6 NC_001875.2 + 35525 0.66 0.998824
Target:  5'- uAUGAC-----GCGGCCacgguGCUGGCCg -3'
miRNA:   3'- -UAUUGuuuguUGUCGGauu--CGACCGG- -5'
6894 5' -47.6 NC_001875.2 + 35499 0.66 0.998824
Target:  5'- -cGGCAuGACAACuGCCggcaacGGGC-GGCCg -3'
miRNA:   3'- uaUUGU-UUGUUGuCGGa-----UUCGaCCGG- -5'
6894 5' -47.6 NC_001875.2 + 121953 0.66 0.998671
Target:  5'- --uGCGcGCGGCAGCgUugcagcguauucaaaAAGCUGGCg -3'
miRNA:   3'- uauUGUuUGUUGUCGgA---------------UUCGACCGg -5'
6894 5' -47.6 NC_001875.2 + 65723 0.66 0.998561
Target:  5'- -cGACGcGACGACGGCC--AGCUGuaCa -3'
miRNA:   3'- uaUUGU-UUGUUGUCGGauUCGACcgG- -5'
6894 5' -47.6 NC_001875.2 + 17096 0.66 0.998561
Target:  5'- -gGGCAAGCcGCGcGCCacuGGC-GGCCg -3'
miRNA:   3'- uaUUGUUUGuUGU-CGGau-UCGaCCGG- -5'
6894 5' -47.6 NC_001875.2 + 27866 0.66 0.998561
Target:  5'- aAUGGCAAaacGCGguauuGCGGUCguucgccguGCUGGCCa -3'
miRNA:   3'- -UAUUGUU---UGU-----UGUCGGauu------CGACCGG- -5'
6894 5' -47.6 NC_001875.2 + 8933 0.66 0.998561
Target:  5'- -cGACGcuGCAGCAGC---GGCcGGCCg -3'
miRNA:   3'- uaUUGUu-UGUUGUCGgauUCGaCCGG- -5'
6894 5' -47.6 NC_001875.2 + 67438 0.66 0.998561
Target:  5'- gAUGACGgagcccAGCAACAGCgUcugaAAGCUGacgcGCCg -3'
miRNA:   3'- -UAUUGU------UUGUUGUCGgA----UUCGAC----CGG- -5'
6894 5' -47.6 NC_001875.2 + 58171 0.66 0.998561
Target:  5'- -cAGCAgccgccgcAGCAGCAGCCgcAGCc-GCCg -3'
miRNA:   3'- uaUUGU--------UUGUUGUCGGauUCGacCGG- -5'
6894 5' -47.6 NC_001875.2 + 33612 0.66 0.998561
Target:  5'- --cACGGGCAGCAGUCc--GUcGGCCg -3'
miRNA:   3'- uauUGUUUGUUGUCGGauuCGaCCGG- -5'
6894 5' -47.6 NC_001875.2 + 80509 0.66 0.998532
Target:  5'- ----aAAACGACAccauggcGCgUgcGAGCUGGCCg -3'
miRNA:   3'- uauugUUUGUUGU-------CGgA--UUCGACCGG- -5'
6894 5' -47.6 NC_001875.2 + 39038 0.66 0.998532
Target:  5'- -cGGCAucGGCGGCGGCgCUGuaccgcaAGCgcaUGGCCa -3'
miRNA:   3'- uaUUGU--UUGUUGUCG-GAU-------UCG---ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.