miRNA display CGI


Results 1 - 20 of 448 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6895 5' -55.2 NC_001875.2 + 80238 0.66 0.919965
Target:  5'- --gUGCCaGugGuCGCACAAgcuguuaaacguggcCaCGCCGCg -3'
miRNA:   3'- caaACGG-CugC-GCGUGUUa--------------G-GCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 57213 0.66 0.919394
Target:  5'- --cUGCCGACa-GCGCAGUgCaGCCGa -3'
miRNA:   3'- caaACGGCUGcgCGUGUUAgG-CGGCg -5'
6895 5' -55.2 NC_001875.2 + 37684 0.66 0.919394
Target:  5'- ---gGCgaUGACGCGCACAAgaCGCUGa -3'
miRNA:   3'- caaaCG--GCUGCGCGUGUUagGCGGCg -5'
6895 5' -55.2 NC_001875.2 + 126326 0.66 0.919394
Target:  5'- ---gGCCGGCGUaaacuGCGCGcGUgCGCCGg -3'
miRNA:   3'- caaaCGGCUGCG-----CGUGU-UAgGCGGCg -5'
6895 5' -55.2 NC_001875.2 + 2668 0.66 0.919394
Target:  5'- ---cGCCGGCgGCGCcugggGCAA-CUGCgGCg -3'
miRNA:   3'- caaaCGGCUG-CGCG-----UGUUaGGCGgCG- -5'
6895 5' -55.2 NC_001875.2 + 99439 0.66 0.919394
Target:  5'- ---cGCCGuCGCcCACAAcuuuugcgUCGCCGCc -3'
miRNA:   3'- caaaCGGCuGCGcGUGUUa-------GGCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 96188 0.66 0.919394
Target:  5'- --gUGCCuGAuggcCGCGCACu-UgCGCUGCg -3'
miRNA:   3'- caaACGG-CU----GCGCGUGuuAgGCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 78159 0.66 0.919394
Target:  5'- --gUGuuGGCGCuGCGCGG--CGCCGUc -3'
miRNA:   3'- caaACggCUGCG-CGUGUUagGCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 60308 0.66 0.919394
Target:  5'- ---aGgCGACGCGUcgcaGCGGUUCuugggGCCGCa -3'
miRNA:   3'- caaaCgGCUGCGCG----UGUUAGG-----CGGCG- -5'
6895 5' -55.2 NC_001875.2 + 37530 0.66 0.919394
Target:  5'- --cUGCCugGACGCGCcCAAcCUGCUGg -3'
miRNA:   3'- caaACGG--CUGCGCGuGUUaGGCGGCg -5'
6895 5' -55.2 NC_001875.2 + 130422 0.66 0.91882
Target:  5'- ---cGCUGACGCaccgcuaaaaauaGCACAccaGggCGCCGCu -3'
miRNA:   3'- caaaCGGCUGCG-------------CGUGU---UagGCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 23966 0.66 0.91882
Target:  5'- ---cGUCGG-GCGCGCcuuguuuaaaauaGAUCCGgCCGCu -3'
miRNA:   3'- caaaCGGCUgCGCGUG-------------UUAGGC-GGCG- -5'
6895 5' -55.2 NC_001875.2 + 71693 0.66 0.917084
Target:  5'- --aUGCggCGugGUGCACGAcggacaacugggaCCGCUGCg -3'
miRNA:   3'- caaACG--GCugCGCGUGUUa------------GGCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 50547 0.66 0.913545
Target:  5'- ---cGCCGGCgGCGCGCGuGUCUuuUGCg -3'
miRNA:   3'- caaaCGGCUG-CGCGUGU-UAGGcgGCG- -5'
6895 5' -55.2 NC_001875.2 + 127291 0.66 0.913545
Target:  5'- -cUUGCCGACGUGCGCucuauAAUUgGCg-- -3'
miRNA:   3'- caAACGGCUGCGCGUG-----UUAGgCGgcg -5'
6895 5' -55.2 NC_001875.2 + 91659 0.66 0.913545
Target:  5'- ---gGCCGuACGCGUACGG-CaCGCCcauGCg -3'
miRNA:   3'- caaaCGGC-UGCGCGUGUUaG-GCGG---CG- -5'
6895 5' -55.2 NC_001875.2 + 37211 0.66 0.913545
Target:  5'- ---aGCCuGGCGCaGCggugcaGCAAgccgCUGCCGCg -3'
miRNA:   3'- caaaCGG-CUGCG-CG------UGUUa---GGCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 77696 0.66 0.913545
Target:  5'- aUUUGCgCGACuGC-CGCcGUCCGCUuGCa -3'
miRNA:   3'- cAAACG-GCUG-CGcGUGuUAGGCGG-CG- -5'
6895 5' -55.2 NC_001875.2 + 48855 0.66 0.913545
Target:  5'- ---cGCCGGCGaCGaGCGG--CGCCGCg -3'
miRNA:   3'- caaaCGGCUGC-GCgUGUUagGCGGCG- -5'
6895 5' -55.2 NC_001875.2 + 90955 0.66 0.913545
Target:  5'- uUUUGCaaaaaACGCGCACGcgauuuucGUgCGCCGUu -3'
miRNA:   3'- cAAACGgc---UGCGCGUGU--------UAgGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.