miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6897 3' -52.2 NC_001875.2 + 102921 0.66 0.960444
Target:  5'- --aGCGGagguGGCGgaUGaCCGGCUGUG-Ca -3'
miRNA:   3'- uuaCGUU----CCGCaaAC-GGCCGAUACuG- -5'
6897 3' -52.2 NC_001875.2 + 97536 0.66 0.960444
Target:  5'- --gGUggGcGCGUUUGgUGGCcAUGGCu -3'
miRNA:   3'- uuaCGuuC-CGCAAACgGCCGaUACUG- -5'
6897 3' -52.2 NC_001875.2 + 11984 0.66 0.960444
Target:  5'- --gGCGAcGGCGUUgggcGCgGGUgugGUGGCg -3'
miRNA:   3'- uuaCGUU-CCGCAAa---CGgCCGa--UACUG- -5'
6897 3' -52.2 NC_001875.2 + 43729 0.66 0.95238
Target:  5'- -cUGUAauuggaaacGGGCGUUgGCUGGCU-UGGCu -3'
miRNA:   3'- uuACGU---------UCCGCAAaCGGCCGAuACUG- -5'
6897 3' -52.2 NC_001875.2 + 93801 0.66 0.947961
Target:  5'- gGAUGau-GGCGUcaugucccagUGCCGGUUGUGGa -3'
miRNA:   3'- -UUACguuCCGCAa---------ACGGCCGAUACUg -5'
6897 3' -52.2 NC_001875.2 + 43909 0.66 0.947961
Target:  5'- --gGCGGGGCGUUUGCggUGGCa----- -3'
miRNA:   3'- uuaCGUUCCGCAAACG--GCCGauacug -5'
6897 3' -52.2 NC_001875.2 + 63045 0.66 0.947961
Target:  5'- uGGUGC-AGGUGUUcGCCGGCa----- -3'
miRNA:   3'- -UUACGuUCCGCAAaCGGCCGauacug -5'
6897 3' -52.2 NC_001875.2 + 73617 0.67 0.943279
Target:  5'- -uUGCGGcGGCGgcUGCggCGGCUGcGGCg -3'
miRNA:   3'- uuACGUU-CCGCaaACG--GCCGAUaCUG- -5'
6897 3' -52.2 NC_001875.2 + 22586 0.67 0.938331
Target:  5'- --cGCGGcGCGUUggccgGCCGGCUGU-ACg -3'
miRNA:   3'- uuaCGUUcCGCAAa----CGGCCGAUAcUG- -5'
6897 3' -52.2 NC_001875.2 + 27327 0.67 0.927629
Target:  5'- cGUGCAAaagccggacGGCGUUUcGCCGGCUc--GCa -3'
miRNA:   3'- uUACGUU---------CCGCAAA-CGGCCGAuacUG- -5'
6897 3' -52.2 NC_001875.2 + 4860 0.67 0.921872
Target:  5'- -uUGCAGGGCauccgUUG-UGGUUAUGACa -3'
miRNA:   3'- uuACGUUCCGca---AACgGCCGAUACUG- -5'
6897 3' -52.2 NC_001875.2 + 6977 0.68 0.915846
Target:  5'- -uUGCAGGGCGcaaagcgGCCGGUguggGUGuGCu -3'
miRNA:   3'- uuACGUUCCGCaaa----CGGCCGa---UAC-UG- -5'
6897 3' -52.2 NC_001875.2 + 86140 0.68 0.909551
Target:  5'- cAGUGCGcGGCGc--GCgCGGCgagAUGACg -3'
miRNA:   3'- -UUACGUuCCGCaaaCG-GCCGa--UACUG- -5'
6897 3' -52.2 NC_001875.2 + 98627 0.68 0.909551
Target:  5'- --gGCGAGcccgcgcccGCGUUUGCCGGCagcgaGGCg -3'
miRNA:   3'- uuaCGUUC---------CGCAAACGGCCGaua--CUG- -5'
6897 3' -52.2 NC_001875.2 + 74950 0.68 0.896163
Target:  5'- -cUGCugcGGCGguacgaccUGCCGGCUAUG-Ca -3'
miRNA:   3'- uuACGuu-CCGCaa------ACGGCCGAUACuG- -5'
6897 3' -52.2 NC_001875.2 + 75654 0.68 0.896163
Target:  5'- --gGCGAuGGCGUUggcGUCGGCgucggcgAUGGCg -3'
miRNA:   3'- uuaCGUU-CCGCAAa--CGGCCGa------UACUG- -5'
6897 3' -52.2 NC_001875.2 + 130854 0.68 0.889077
Target:  5'- --aGCAAuGGCGUUgUGCUGGUUGuUGAUu -3'
miRNA:   3'- uuaCGUU-CCGCAA-ACGGCCGAU-ACUG- -5'
6897 3' -52.2 NC_001875.2 + 60854 0.69 0.874144
Target:  5'- -uUGCuGGGCGUUU-CCaGGCUcGUGGCg -3'
miRNA:   3'- uuACGuUCCGCAAAcGG-CCGA-UACUG- -5'
6897 3' -52.2 NC_001875.2 + 81987 0.69 0.866306
Target:  5'- --gGCAAGGCGc--GCCGGCc--GGCg -3'
miRNA:   3'- uuaCGUUCCGCaaaCGGCCGauaCUG- -5'
6897 3' -52.2 NC_001875.2 + 43794 0.69 0.858231
Target:  5'- --cGC-GGGCGUUgGCUGGCU-UGGCu -3'
miRNA:   3'- uuaCGuUCCGCAAaCGGCCGAuACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.