miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6897 5' -65.9 NC_001875.2 + 68839 0.66 0.431851
Target:  5'- cUGCCUGGCgGacgggucgcacGCguGCGCGagugCCCCGa -3'
miRNA:   3'- cACGGGCCGgU-----------CGguCGCGCa---GGGGU- -5'
6897 5' -65.9 NC_001875.2 + 43991 0.66 0.431851
Target:  5'- -cGCCaCGGaCAGCCcgacgGGCGCcGUgCCCAg -3'
miRNA:   3'- caCGG-GCCgGUCGG-----UCGCG-CAgGGGU- -5'
6897 5' -65.9 NC_001875.2 + 91189 0.66 0.423357
Target:  5'- -cGCCgCGcaaCAGCCGGCGCGUgcgCgCCCAg -3'
miRNA:   3'- caCGG-GCcg-GUCGGUCGCGCA---G-GGGU- -5'
6897 5' -65.9 NC_001875.2 + 21197 0.66 0.414963
Target:  5'- -cGCgCGGCaCGGCCAGCGCca--CCAg -3'
miRNA:   3'- caCGgGCCG-GUCGGUCGCGcaggGGU- -5'
6897 5' -65.9 NC_001875.2 + 9087 0.66 0.414963
Target:  5'- -cGCCUguGGCgAGUCGGCGCuaaaCCCCGc -3'
miRNA:   3'- caCGGG--CCGgUCGGUCGCGca--GGGGU- -5'
6897 5' -65.9 NC_001875.2 + 111840 0.66 0.414963
Target:  5'- cUGCgCGaGCCGGCCAG-GUGUCUggCCAc -3'
miRNA:   3'- cACGgGC-CGGUCGGUCgCGCAGG--GGU- -5'
6897 5' -65.9 NC_001875.2 + 109257 0.66 0.414963
Target:  5'- -aG-CCGGCCGGCCAaCGCGccgCgCCCGg -3'
miRNA:   3'- caCgGGCCGGUCGGUcGCGCa--G-GGGU- -5'
6897 5' -65.9 NC_001875.2 + 49687 0.66 0.41413
Target:  5'- -cGCCCgucGGCCAGCaaAGCggacucgagguggGCGUCCUCGg -3'
miRNA:   3'- caCGGG---CCGGUCGg-UCG-------------CGCAGGGGU- -5'
6897 5' -65.9 NC_001875.2 + 14807 0.66 0.406673
Target:  5'- uUGCCaggaGcGCCAGCaugguCAGCGCG-CCCUg -3'
miRNA:   3'- cACGGg---C-CGGUCG-----GUCGCGCaGGGGu -5'
6897 5' -65.9 NC_001875.2 + 99392 0.66 0.406673
Target:  5'- -cGCaCCGGCgGcGCCAGCGgGUCgCgCAg -3'
miRNA:   3'- caCG-GGCCGgU-CGGUCGCgCAG-GgGU- -5'
6897 5' -65.9 NC_001875.2 + 111887 0.66 0.398487
Target:  5'- -gGCgCCGGCCGGaCCGuGCGCGccggccgCUCCGu -3'
miRNA:   3'- caCG-GGCCGGUC-GGU-CGCGCa------GGGGU- -5'
6897 5' -65.9 NC_001875.2 + 75973 0.66 0.397675
Target:  5'- uUGCCgccguagucgaguCGGCguGCUcaAGCGUGUCCgCCAa -3'
miRNA:   3'- cACGG-------------GCCGguCGG--UCGCGCAGG-GGU- -5'
6897 5' -65.9 NC_001875.2 + 22578 0.66 0.396052
Target:  5'- -cGCCCgggcgcggcgcguuGGCCGGCCGGCuguacgguuucGUGUCUCUg -3'
miRNA:   3'- caCGGG--------------CCGGUCGGUCG-----------CGCAGGGGu -5'
6897 5' -65.9 NC_001875.2 + 21705 0.66 0.396052
Target:  5'- gGUGCUgCGGuCCAGCCgcagcagguuccacAGCGCGUUCUUg -3'
miRNA:   3'- -CACGG-GCC-GGUCGG--------------UCGCGCAGGGGu -5'
6897 5' -65.9 NC_001875.2 + 81811 0.66 0.390408
Target:  5'- -gGgCCGGCCGccucGCCGcccggcgacacGCGCG-CCCCAa -3'
miRNA:   3'- caCgGGCCGGU----CGGU-----------CGCGCaGGGGU- -5'
6897 5' -65.9 NC_001875.2 + 33456 0.66 0.389606
Target:  5'- -aGCgCGGCCGGCCaguggucgaaaguGGCGCG-CCgCGc -3'
miRNA:   3'- caCGgGCCGGUCGG-------------UCGCGCaGGgGU- -5'
6897 5' -65.9 NC_001875.2 + 98622 0.67 0.374574
Target:  5'- -cGCCCGGCgAGCC--CGCG-CCCg- -3'
miRNA:   3'- caCGGGCCGgUCGGucGCGCaGGGgu -5'
6897 5' -65.9 NC_001875.2 + 62598 0.67 0.374574
Target:  5'- cGUGCCgucgggcaaguCGGCaCAGC--GCGCGUCgCCCGa -3'
miRNA:   3'- -CACGG-----------GCCG-GUCGguCGCGCAG-GGGU- -5'
6897 5' -65.9 NC_001875.2 + 84371 0.67 0.374574
Target:  5'- gGUGCgCGGCCuGCCGGgGCGgCgUCGg -3'
miRNA:   3'- -CACGgGCCGGuCGGUCgCGCaGgGGU- -5'
6897 5' -65.9 NC_001875.2 + 117933 0.67 0.374574
Target:  5'- cUGCa-GGCCGGCguGCGCG-CCgCCGc -3'
miRNA:   3'- cACGggCCGGUCGguCGCGCaGG-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.