miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6898 3' -52.7 NC_001875.2 + 67827 0.66 0.9666
Target:  5'- -cGGUUuucgGCCAaGUgGcGCGGCGUGCu -3'
miRNA:   3'- uaCCAA----CGGUaUAgUuUGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 61449 0.66 0.9666
Target:  5'- -----aGCCGggAUCGAccucgacaGCGGCGCGCa -3'
miRNA:   3'- uaccaaCGGUa-UAGUU--------UGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 71120 0.66 0.9666
Target:  5'- uUGGUguUGCUGUGgcuGGGCGGCcucaGCGCGg -3'
miRNA:   3'- uACCA--ACGGUAUag-UUUGCCG----CGCGC- -5'
6898 3' -52.7 NC_001875.2 + 75977 0.66 0.9666
Target:  5'- -----cGCCGUAgUCGAGuCGGCGUGCu -3'
miRNA:   3'- uaccaaCGGUAU-AGUUU-GCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 81975 0.66 0.9666
Target:  5'- uUGGUUggcGCCGg--CAAGgcgcgccggcCGGCGCGCa -3'
miRNA:   3'- uACCAA---CGGUauaGUUU----------GCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 99584 0.66 0.963185
Target:  5'- -----cGCgCGUAUaaaAGGCGGCGCGCa -3'
miRNA:   3'- uaccaaCG-GUAUAg--UUUGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 103044 0.66 0.963185
Target:  5'- -cGuUUGCCGcgGUCAguuagacaaAGCGGUGCGCa -3'
miRNA:   3'- uaCcAACGGUa-UAGU---------UUGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 131517 0.66 0.959534
Target:  5'- -cGGggGCCGgcauccguUUGAGCGGaGCGCGg -3'
miRNA:   3'- uaCCaaCGGUau------AGUUUGCCgCGCGC- -5'
6898 3' -52.7 NC_001875.2 + 26361 0.66 0.955641
Target:  5'- -aGGUgGCCAUGUac-GCGGC-CGCa -3'
miRNA:   3'- uaCCAaCGGUAUAguuUGCCGcGCGc -5'
6898 3' -52.7 NC_001875.2 + 69893 0.66 0.955641
Target:  5'- -aGGcgcGCCG-GUCGAcaaacGCGGCGCGCu -3'
miRNA:   3'- uaCCaa-CGGUaUAGUU-----UGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 74787 0.66 0.953187
Target:  5'- aAUGGUUGCCcaccgucgagcuggaGUA-CGAcgcgcccaGCGGCGCGUu -3'
miRNA:   3'- -UACCAACGG---------------UAUaGUU--------UGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 9585 0.66 0.951501
Target:  5'- uUGGccUGCgGUuagCGGugGGCGCGUGc -3'
miRNA:   3'- uACCa-ACGgUAua-GUUugCCGCGCGC- -5'
6898 3' -52.7 NC_001875.2 + 115064 0.66 0.951501
Target:  5'- cAUGGUgaaGCU---UUAcGCGGCGCGCa -3'
miRNA:   3'- -UACCAa--CGGuauAGUuUGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 83405 0.66 0.951501
Target:  5'- uUGGUcGCCAUGgcgccgcaAAACuGCGCGCu -3'
miRNA:   3'- uACCAaCGGUAUag------UUUGcCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 89905 0.66 0.951501
Target:  5'- cGUGGcgccGCgCAUAUaaaGGGCGGCGCGUc -3'
miRNA:   3'- -UACCaa--CG-GUAUAg--UUUGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 123755 0.66 0.951073
Target:  5'- -cGGUacgGCCGUcgCGAcaacaacGCGGaCGCGCu -3'
miRNA:   3'- uaCCAa--CGGUAuaGUU-------UGCC-GCGCGc -5'
6898 3' -52.7 NC_001875.2 + 126322 0.66 0.94711
Target:  5'- -cGGcgGCCGgcgUAAACuGCGCGCGu -3'
miRNA:   3'- uaCCaaCGGUauaGUUUGcCGCGCGC- -5'
6898 3' -52.7 NC_001875.2 + 50341 0.66 0.94711
Target:  5'- gGUGGUgucggcGUCGUuggcGUCGGGCcGCGCGCGc -3'
miRNA:   3'- -UACCAa-----CGGUA----UAGUUUGcCGCGCGC- -5'
6898 3' -52.7 NC_001875.2 + 8817 0.66 0.94711
Target:  5'- -gGGUUGgg----CAGGCGGCGCGCc -3'
miRNA:   3'- uaCCAACgguauaGUUUGCCGCGCGc -5'
6898 3' -52.7 NC_001875.2 + 125134 0.66 0.94711
Target:  5'- uGUGGcgggGCaugGUGUaCAAAUGGCGUGCGc -3'
miRNA:   3'- -UACCaa--CGg--UAUA-GUUUGCCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.