miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6898 5' -48.1 NC_001875.2 + 42751 0.66 0.998931
Target:  5'- cGCGCAUggugAGCGgcgcgcucgggucgGCCGUGCGcACAAUu -3'
miRNA:   3'- aCGUGUAa---UUGCa-------------CGGCGUGU-UGUUG- -5'
6898 5' -48.1 NC_001875.2 + 116465 0.66 0.998931
Target:  5'- gUGCAaGUUAAUuauuuuuugcagcuaGUGCUGCAC-GCGGCg -3'
miRNA:   3'- -ACGUgUAAUUG---------------CACGGCGUGuUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 10555 0.66 0.998931
Target:  5'- aGCACGcccaccaucaGgcaGCUGCGCGACAACg -3'
miRNA:   3'- aCGUGUaauug-----Ca--CGGCGUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 9982 0.66 0.998864
Target:  5'- gUGUACAgggcguACGUGCaCGCGCuugugaaaaacugccACAACg -3'
miRNA:   3'- -ACGUGUaau---UGCACG-GCGUGu--------------UGUUG- -5'
6898 5' -48.1 NC_001875.2 + 47592 0.66 0.99884
Target:  5'- cUGCACA-UGAC-UG-UGUACAGCGACa -3'
miRNA:   3'- -ACGUGUaAUUGcACgGCGUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 85713 0.66 0.99884
Target:  5'- aGCugGcuuaugAACGUGUCGCAUAuuuuUAACa -3'
miRNA:   3'- aCGugUaa----UUGCACGGCGUGUu---GUUG- -5'
6898 5' -48.1 NC_001875.2 + 11155 0.66 0.99884
Target:  5'- aUGgACGgccgguCGaUGgCGCACAGCAGCg -3'
miRNA:   3'- -ACgUGUaauu--GC-ACgGCGUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 34794 0.66 0.99884
Target:  5'- cGCACucGUUAAUGUGC-GC-CGGCAAg -3'
miRNA:   3'- aCGUG--UAAUUGCACGgCGuGUUGUUg -5'
6898 5' -48.1 NC_001875.2 + 42937 0.66 0.99884
Target:  5'- aGCGCGccaaaggccagcUUGACGaucuUGUCGCGCAucacCAGCa -3'
miRNA:   3'- aCGUGU------------AAUUGC----ACGGCGUGUu---GUUG- -5'
6898 5' -48.1 NC_001875.2 + 59534 0.66 0.99884
Target:  5'- cGCGCAcuUUAACGUGUacaGCGugAACc -3'
miRNA:   3'- aCGUGU--AAUUGCACGgcgUGUugUUG- -5'
6898 5' -48.1 NC_001875.2 + 32912 0.66 0.99884
Target:  5'- cGCGCGU---CGcGCaCGCGCAACcGCg -3'
miRNA:   3'- aCGUGUAauuGCaCG-GCGUGUUGuUG- -5'
6898 5' -48.1 NC_001875.2 + 35389 0.66 0.99884
Target:  5'- gGCGCugcugucCGUGgCGCGCGcgaGCGACg -3'
miRNA:   3'- aCGUGuaauu--GCACgGCGUGU---UGUUG- -5'
6898 5' -48.1 NC_001875.2 + 108192 0.66 0.99884
Target:  5'- cGCACGUggGACGccGuuGCGaaaAACGGCa -3'
miRNA:   3'- aCGUGUAa-UUGCa-CggCGUg--UUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 96053 0.66 0.99884
Target:  5'- aGCGCGU--GCGcaccgGCaCGCACuaugGACAACg -3'
miRNA:   3'- aCGUGUAauUGCa----CG-GCGUG----UUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 100790 0.66 0.99884
Target:  5'- gGCACAguuuccGACGUacgGCCGCGCcggguCGGCc -3'
miRNA:   3'- aCGUGUaa----UUGCA---CGGCGUGuu---GUUG- -5'
6898 5' -48.1 NC_001875.2 + 29774 0.66 0.99884
Target:  5'- cGC-CAUguACG-GCCGCGgGugGACg -3'
miRNA:   3'- aCGuGUAauUGCaCGGCGUgUugUUG- -5'
6898 5' -48.1 NC_001875.2 + 61965 0.66 0.99884
Target:  5'- cGCGCcuaGAUGUGgcaaacaagacCUGCGCGGCGACa -3'
miRNA:   3'- aCGUGuaaUUGCAC-----------GGCGUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 26243 0.66 0.998817
Target:  5'- gGCAUGgcGGCGUacgccucguccuuGCCGCACAugauguagACGGCg -3'
miRNA:   3'- aCGUGUaaUUGCA-------------CGGCGUGU--------UGUUG- -5'
6898 5' -48.1 NC_001875.2 + 44647 0.66 0.998817
Target:  5'- gUGCGCGgucgcGCGUcaagaucucgccaGCCaGCGCGGCAAUg -3'
miRNA:   3'- -ACGUGUaau--UGCA-------------CGG-CGUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 121272 0.66 0.998583
Target:  5'- cUGCACGU-----UGUCGCGCAGCuGCc -3'
miRNA:   3'- -ACGUGUAauugcACGGCGUGUUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.