miRNA display CGI


Results 1 - 20 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6898 5' -48.1 NC_001875.2 + 85222 0.66 0.997922
Target:  5'- cGCGCggUAGC--GCCGCAUGuCGACg -3'
miRNA:   3'- aCGUGuaAUUGcaCGGCGUGUuGUUG- -5'
6898 5' -48.1 NC_001875.2 + 111090 0.66 0.99746
Target:  5'- gGCGCcgUGaaaaccuuuuguuGCG-GCgUGCACGGCAGCa -3'
miRNA:   3'- aCGUGuaAU-------------UGCaCG-GCGUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 86333 0.66 0.997922
Target:  5'- gGCGCGUUGGC-UGCCGUggaGGCAc- -3'
miRNA:   3'- aCGUGUAAUUGcACGGCGug-UUGUug -5'
6898 5' -48.1 NC_001875.2 + 116465 0.66 0.998931
Target:  5'- gUGCAaGUUAAUuauuuuuugcagcuaGUGCUGCAC-GCGGCg -3'
miRNA:   3'- -ACGUgUAAUUG---------------CACGGCGUGuUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 99401 0.66 0.997922
Target:  5'- gGCGCc--AGCGgGUCGCGCAGCGc- -3'
miRNA:   3'- aCGUGuaaUUGCaCGGCGUGUUGUug -5'
6898 5' -48.1 NC_001875.2 + 66497 0.66 0.997922
Target:  5'- aGCACGUaguagUAAUagGUGCCGCcgcCGGCAAa -3'
miRNA:   3'- aCGUGUA-----AUUG--CACGGCGu--GUUGUUg -5'
6898 5' -48.1 NC_001875.2 + 130864 0.66 0.997922
Target:  5'- cGUugGcgAGCGUcGCCGCguGCAAgAACg -3'
miRNA:   3'- aCGugUaaUUGCA-CGGCG--UGUUgUUG- -5'
6898 5' -48.1 NC_001875.2 + 91568 0.66 0.997505
Target:  5'- gUGCACAaucAACGUGuuGCAguaaAACAGg -3'
miRNA:   3'- -ACGUGUaa-UUGCACggCGUg---UUGUUg -5'
6898 5' -48.1 NC_001875.2 + 122683 0.66 0.997922
Target:  5'- aGCAaaaaGUUGGCGUGC-GC-CGugGACa -3'
miRNA:   3'- aCGUg---UAAUUGCACGgCGuGUugUUG- -5'
6898 5' -48.1 NC_001875.2 + 10441 0.66 0.997505
Target:  5'- gGCGCAgcAGCuuugacGCgGCGCGGCGGCg -3'
miRNA:   3'- aCGUGUaaUUGca----CGgCGUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 3835 0.66 0.997505
Target:  5'- cGCACGccGGCGcgGCCGCAgccucCAACAu- -3'
miRNA:   3'- aCGUGUaaUUGCa-CGGCGU-----GUUGUug -5'
6898 5' -48.1 NC_001875.2 + 92254 0.66 0.997922
Target:  5'- gUGCACGcgGAcCGUGCUGaGCAGCGc- -3'
miRNA:   3'- -ACGUGUaaUU-GCACGGCgUGUUGUug -5'
6898 5' -48.1 NC_001875.2 + 126341 0.66 0.997922
Target:  5'- cGCGCGUgcgccgguCGUGCUGUGCAcCGAg -3'
miRNA:   3'- aCGUGUAauu-----GCACGGCGUGUuGUUg -5'
6898 5' -48.1 NC_001875.2 + 11939 0.66 0.997505
Target:  5'- gGCGCGccGACuGUGCgCGCGacCGGCGGCg -3'
miRNA:   3'- aCGUGUaaUUG-CACG-GCGU--GUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 125016 0.66 0.997922
Target:  5'- gGCACGUUGuCGacGCgGCGCAGCu-- -3'
miRNA:   3'- aCGUGUAAUuGCa-CGgCGUGUUGuug -5'
6898 5' -48.1 NC_001875.2 + 98164 0.66 0.997922
Target:  5'- cGCACGUcgGGcCGUuuguuuuaccacGCCGC-CGACGGCg -3'
miRNA:   3'- aCGUGUAa-UU-GCA------------CGGCGuGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 2313 0.66 0.997505
Target:  5'- aGCAUAcgGACGgcaacaGCaCGgGCAACAACu -3'
miRNA:   3'- aCGUGUaaUUGCa-----CG-GCgUGUUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 39558 0.66 0.997367
Target:  5'- cGCGCuaAUUGugGUGCUGUuuguuuguguguuuGCuAGCAACa -3'
miRNA:   3'- aCGUG--UAAUugCACGGCG--------------UG-UUGUUG- -5'
6898 5' -48.1 NC_001875.2 + 29258 0.66 0.997922
Target:  5'- cUGCGgGUgcGCG-GCCGC-CGACcGCg -3'
miRNA:   3'- -ACGUgUAauUGCaCGGCGuGUUGuUG- -5'
6898 5' -48.1 NC_001875.2 + 64882 0.66 0.997922
Target:  5'- aGCACGUUAAgGUcGUCGaCGCu-CAGCu -3'
miRNA:   3'- aCGUGUAAUUgCA-CGGC-GUGuuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.