miRNA display CGI


Results 21 - 40 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 3' -57.1 NC_001875.2 + 119182 0.66 0.845347
Target:  5'- -----cGCGGCGCGCGUCaacaaCAGCa -3'
miRNA:   3'- guuuuuUGCCGCGCGCGGcgg--GUCGc -5'
6900 3' -57.1 NC_001875.2 + 109104 0.66 0.844539
Target:  5'- --uGGAGCGGUGCGUGgCCggcgcacaaguagGCCaCAGUGg -3'
miRNA:   3'- guuUUUUGCCGCGCGC-GG-------------CGG-GUCGC- -5'
6900 3' -57.1 NC_001875.2 + 100147 0.66 0.842919
Target:  5'- ----cGGCGGCGCGCaagcggcgguccacGCCggcacgcugGCCCAGUc -3'
miRNA:   3'- guuuuUUGCCGCGCG--------------CGG---------CGGGUCGc -5'
6900 3' -57.1 NC_001875.2 + 55329 0.66 0.837188
Target:  5'- ----cGACGGUGaugaCGCGCCGCUUcgggGGCGc -3'
miRNA:   3'- guuuuUUGCCGC----GCGCGGCGGG----UCGC- -5'
6900 3' -57.1 NC_001875.2 + 781 0.66 0.837188
Target:  5'- ----cGGCGGCGCGCGgaaCGUUCAugGCGu -3'
miRNA:   3'- guuuuUUGCCGCGCGCg--GCGGGU--CGC- -5'
6900 3' -57.1 NC_001875.2 + 80285 0.66 0.837188
Target:  5'- ---uGAACGGCucGCacuugacgaGCGCCGUcgCCAGCGc -3'
miRNA:   3'- guuuUUUGCCG--CG---------CGCGGCG--GGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 42939 0.66 0.837188
Target:  5'- -cAAAcgUGGCGUGCGucagcagcCCGCgCAGCGc -3'
miRNA:   3'- guUUUuuGCCGCGCGC--------GGCGgGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 70968 0.66 0.837188
Target:  5'- aAuuGGACGGC-CGgGCCGUCCA-CGa -3'
miRNA:   3'- gUuuUUUGCCGcGCgCGGCGGGUcGC- -5'
6900 3' -57.1 NC_001875.2 + 95428 0.66 0.837188
Target:  5'- -----cACcGCG-GCGCCGgCCAGCGu -3'
miRNA:   3'- guuuuuUGcCGCgCGCGGCgGGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 57746 0.66 0.837188
Target:  5'- -----cACGGCGU-CGCUGCCCAacuGCa -3'
miRNA:   3'- guuuuuUGCCGCGcGCGGCGGGU---CGc -5'
6900 3' -57.1 NC_001875.2 + 63687 0.66 0.837188
Target:  5'- -----cGCGGCGCGCaGCguuCGCCgAuGCGg -3'
miRNA:   3'- guuuuuUGCCGCGCG-CG---GCGGgU-CGC- -5'
6900 3' -57.1 NC_001875.2 + 19873 0.66 0.837188
Target:  5'- -----cGCGGCGCggGCGCCGUUU-GCGa -3'
miRNA:   3'- guuuuuUGCCGCG--CGCGGCGGGuCGC- -5'
6900 3' -57.1 NC_001875.2 + 49958 0.66 0.836361
Target:  5'- --cGGAGCuGCGCGCGCUGCUgucgcugcugcugUAGCu -3'
miRNA:   3'- guuUUUUGcCGCGCGCGGCGG-------------GUCGc -5'
6900 3' -57.1 NC_001875.2 + 75582 0.66 0.834703
Target:  5'- -cGAGGGCGGCaaaguacugcagccGCGCGCCGgCguGUa -3'
miRNA:   3'- guUUUUUGCCG--------------CGCGCGGCgGguCGc -5'
6900 3' -57.1 NC_001875.2 + 131761 0.66 0.834703
Target:  5'- gCGGAucGGGCGGCGCGUcauuggugucguucGCCGCCgCcGCc -3'
miRNA:   3'- -GUUU--UUUGCCGCGCG--------------CGGCGG-GuCGc -5'
6900 3' -57.1 NC_001875.2 + 37975 0.66 0.82884
Target:  5'- ----cGGCGGCcUGCG-CGCUCAGCGc -3'
miRNA:   3'- guuuuUUGCCGcGCGCgGCGGGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 118479 0.66 0.82884
Target:  5'- uGGAAAACGGCuagcacGCaCGCCaaguGUCCGGCGu -3'
miRNA:   3'- gUUUUUUGCCG------CGcGCGG----CGGGUCGC- -5'
6900 3' -57.1 NC_001875.2 + 46069 0.66 0.82884
Target:  5'- -cAGAAACGGCG-GCGUCGUUCAuCGu -3'
miRNA:   3'- guUUUUUGCCGCgCGCGGCGGGUcGC- -5'
6900 3' -57.1 NC_001875.2 + 103822 0.66 0.82884
Target:  5'- -----uGCGGCGCGUGCUggGCCUucgccacccugGGCa -3'
miRNA:   3'- guuuuuUGCCGCGCGCGG--CGGG-----------UCGc -5'
6900 3' -57.1 NC_001875.2 + 68568 0.66 0.82884
Target:  5'- ----cGGCGGuCGCGCaCCGCgUGGCGc -3'
miRNA:   3'- guuuuUUGCC-GCGCGcGGCGgGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.