miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6900 5' -56.2 NC_001875.2 + 120962 0.66 0.816589
Target:  5'- cGUUGCgcGGCAGCGCCaccGACGCg-- -3'
miRNA:   3'- -UAGCGauUCGUCGCGGca-CUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 83320 0.66 0.816589
Target:  5'- -cCGCgGGGCGcGCGCCGggcgGcGCGCCAAa -3'
miRNA:   3'- uaGCGaUUCGU-CGCGGCa---C-UGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 67121 0.66 0.816589
Target:  5'- cGUCGCccgccuuGGcCAGCGCCGUGuuGCugCGg -3'
miRNA:   3'- -UAGCGau-----UC-GUCGCGGCAC--UGugGUu -5'
6900 5' -56.2 NC_001875.2 + 129754 0.66 0.807541
Target:  5'- uUCGCUGAGCAGCGUacugcgcggguCGguugccgGAgCACCGu -3'
miRNA:   3'- uAGCGAUUCGUCGCG-----------GCa------CU-GUGGUu -5'
6900 5' -56.2 NC_001875.2 + 6813 0.66 0.806626
Target:  5'- gGUCGCUGaaccAGCuGCGCCGcgUcgacaacgugcccGACGCCAAc -3'
miRNA:   3'- -UAGCGAU----UCGuCGCGGC--A-------------CUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 48254 0.66 0.798322
Target:  5'- --aGCUAcGGCGGCGCCccgccggGACACCu- -3'
miRNA:   3'- uagCGAU-UCGUCGCGGca-----CUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 119461 0.67 0.788942
Target:  5'- -aCGacGAGCGGCaCCGUGGCACCc- -3'
miRNA:   3'- uaGCgaUUCGUCGcGGCACUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 50006 0.67 0.788942
Target:  5'- uGUCGCgguuGgGGCGCgCGUGGuCGCCGGg -3'
miRNA:   3'- -UAGCGauu-CgUCGCG-GCACU-GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 72937 0.67 0.788942
Target:  5'- uUCGCUGucgaucuGCAGCGUuuCG-GGCGCCAc -3'
miRNA:   3'- uAGCGAUu------CGUCGCG--GCaCUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 91444 0.67 0.788942
Target:  5'- --aGCUGAGCGGCGgCgCGUGGgcgcgcaugucCACCGAu -3'
miRNA:   3'- uagCGAUUCGUCGC-G-GCACU-----------GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 113172 0.67 0.788942
Target:  5'- uUCGCccAGCAGCcgcaCCGUGACGCg-- -3'
miRNA:   3'- uAGCGauUCGUCGc---GGCACUGUGguu -5'
6900 5' -56.2 NC_001875.2 + 114978 0.67 0.779411
Target:  5'- gGUCGCgcuGGCGGCGCCGauuaACACg-- -3'
miRNA:   3'- -UAGCGau-UCGUCGCGGCac--UGUGguu -5'
6900 5' -56.2 NC_001875.2 + 58871 0.67 0.769738
Target:  5'- uUUGCgcaaccuaucAGGC-GCGCCGUGGCGCCc- -3'
miRNA:   3'- uAGCGa---------UUCGuCGCGGCACUGUGGuu -5'
6900 5' -56.2 NC_001875.2 + 68572 0.67 0.759933
Target:  5'- gGUCGCgcaccgcGUGGCGCCGcUGGcCGCCGAg -3'
miRNA:   3'- -UAGCGauu----CGUCGCGGC-ACU-GUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 100245 0.67 0.750008
Target:  5'- -cCGCccacGGCacGGCGCCG-GACACCAc -3'
miRNA:   3'- uaGCGau--UCG--UCGCGGCaCUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 45749 0.67 0.750008
Target:  5'- -cCGUaAAcGCGGCGCCGagcccGACACCGAg -3'
miRNA:   3'- uaGCGaUU-CGUCGCGGCa----CUGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 122022 0.67 0.748009
Target:  5'- cUCGCccguuuuuuauAGCAGcCGCCGaUGGCGCCGu -3'
miRNA:   3'- uAGCGau---------UCGUC-GCGGC-ACUGUGGUu -5'
6900 5' -56.2 NC_001875.2 + 88135 0.67 0.739971
Target:  5'- -gUGCUGAGCGGCGCCaaaauuGUGugGgCGc -3'
miRNA:   3'- uaGCGAUUCGUCGCGG------CACugUgGUu -5'
6900 5' -56.2 NC_001875.2 + 121165 0.67 0.739971
Target:  5'- cGUUGC--GGCAGCGCC-UG-CGCCAAg -3'
miRNA:   3'- -UAGCGauUCGUCGCGGcACuGUGGUU- -5'
6900 5' -56.2 NC_001875.2 + 83000 0.68 0.709298
Target:  5'- cGUCGCcggcgggcuugAAGCGGCGCCGUaGCGCgCGGa -3'
miRNA:   3'- -UAGCGa----------UUCGUCGCGGCAcUGUG-GUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.