miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 3' -65.3 NC_001875.2 + 41468 0.66 0.400734
Target:  5'- cGGCgCGCGCgGCGUGUcuuguguGGuCUGCgCCGg -3'
miRNA:   3'- -UUGgGCGCGgCGCACG-------UC-GACGgGGC- -5'
6902 3' -65.3 NC_001875.2 + 48770 0.67 0.393392
Target:  5'- cGACCUGgGCUGCGUGUugguGCUGUggUCCu -3'
miRNA:   3'- -UUGGGCgCGGCGCACGu---CGACG--GGGc -5'
6902 3' -65.3 NC_001875.2 + 73673 0.67 0.385337
Target:  5'- --gCUGCuGCUGCG-GCGGCUGCUgCGg -3'
miRNA:   3'- uugGGCG-CGGCGCaCGUCGACGGgGC- -5'
6902 3' -65.3 NC_001875.2 + 110062 0.67 0.385337
Target:  5'- gAACCCGUGUCGCGcGCAgagacGCUGCgCgUGg -3'
miRNA:   3'- -UUGGGCGCGGCGCaCGU-----CGACG-GgGC- -5'
6902 3' -65.3 NC_001875.2 + 5508 0.67 0.384538
Target:  5'- cGACCgGCGCaCGCGcGCAGUUuacgccgGCCgCCGu -3'
miRNA:   3'- -UUGGgCGCG-GCGCaCGUCGA-------CGG-GGC- -5'
6902 3' -65.3 NC_001875.2 + 21568 0.67 0.377392
Target:  5'- cAGCCCGCGCgcucCGCG-GcCAGCcgGCCCa- -3'
miRNA:   3'- -UUGGGCGCG----GCGCaC-GUCGa-CGGGgc -5'
6902 3' -65.3 NC_001875.2 + 131680 0.67 0.377392
Target:  5'- gAGCCacguguuugGCGCCGCGUGC--CUGCCuuGc -3'
miRNA:   3'- -UUGGg--------CGCGGCGCACGucGACGGggC- -5'
6902 3' -65.3 NC_001875.2 + 119056 0.67 0.377392
Target:  5'- cGGCgUGCGCaUGUGcGCGGC-GCCCCGg -3'
miRNA:   3'- -UUGgGCGCG-GCGCaCGUCGaCGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 102599 0.67 0.372679
Target:  5'- cACCCGCaguaugccacggaaGCCGCGcguuugcgcaccuuUGCGGagugGCCCCGc -3'
miRNA:   3'- uUGGGCG--------------CGGCGC--------------ACGUCga--CGGGGC- -5'
6902 3' -65.3 NC_001875.2 + 41818 0.67 0.369558
Target:  5'- cGCCgGCGCCGCG-GCcAGUUGCgcgUCCa -3'
miRNA:   3'- uUGGgCGCGGCGCaCG-UCGACG---GGGc -5'
6902 3' -65.3 NC_001875.2 + 71940 0.67 0.369558
Target:  5'- uGACCgCGCGCucCGCGcGCAGCcUGUCgCCGc -3'
miRNA:   3'- -UUGG-GCGCG--GCGCaCGUCG-ACGG-GGC- -5'
6902 3' -65.3 NC_001875.2 + 57575 0.67 0.361837
Target:  5'- aAACCgGCGCgGCGUcGC-GCUGUCCa- -3'
miRNA:   3'- -UUGGgCGCGgCGCA-CGuCGACGGGgc -5'
6902 3' -65.3 NC_001875.2 + 59208 0.67 0.354228
Target:  5'- uACCCGCGCCguuugGCGUGCcGCagGCCgUa -3'
miRNA:   3'- uUGGGCGCGG-----CGCACGuCGa-CGGgGc -5'
6902 3' -65.3 NC_001875.2 + 128777 0.68 0.339352
Target:  5'- cGACCCcggcGCGCCGC-UGCGcgccucuuacgcGCUGCCCa- -3'
miRNA:   3'- -UUGGG----CGCGGCGcACGU------------CGACGGGgc -5'
6902 3' -65.3 NC_001875.2 + 88813 0.68 0.332085
Target:  5'- uAGCCCGCGcCCGCG-GCGcGCgGCaCUCGc -3'
miRNA:   3'- -UUGGGCGC-GGCGCaCGU-CGaCG-GGGC- -5'
6902 3' -65.3 NC_001875.2 + 98472 0.68 0.331365
Target:  5'- cGGCCUGCuucuuuugcgacuGCCGCGUGCgugauuGGCUGCCg-- -3'
miRNA:   3'- -UUGGGCG-------------CGGCGCACG------UCGACGGggc -5'
6902 3' -65.3 NC_001875.2 + 98332 0.68 0.324934
Target:  5'- cAAgCCGCGCUGCGUGUacaaucgguuGGCgcaCCCCa -3'
miRNA:   3'- -UUgGGCGCGGCGCACG----------UCGac-GGGGc -5'
6902 3' -65.3 NC_001875.2 + 99922 0.68 0.324934
Target:  5'- cGGgCCGCGCgCGCgGUGCAGCgcgGCCaaGu -3'
miRNA:   3'- -UUgGGCGCG-GCG-CACGUCGa--CGGggC- -5'
6902 3' -65.3 NC_001875.2 + 129103 0.68 0.324225
Target:  5'- cAGCCUG-GCCaaaaaagGCG-GCGGCUGCCCUa -3'
miRNA:   3'- -UUGGGCgCGG-------CGCaCGUCGACGGGGc -5'
6902 3' -65.3 NC_001875.2 + 73023 0.68 0.317897
Target:  5'- cAACgCGCGCauuucCGCGUGCAGCUGggccaaCUCGg -3'
miRNA:   3'- -UUGgGCGCG-----GCGCACGUCGACg-----GGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.