miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6902 5' -50.5 NC_001875.2 + 40171 0.69 0.96207
Target:  5'- aCGCgaUGCGCAUGG---GCGUgccGUACGCGu -3'
miRNA:   3'- -GCG--ACGCGUACUacuUGCA---CAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 105157 0.69 0.954362
Target:  5'- aCGCgcgGCGCGUGuUGGGCGaagucaucaUGUGCAUc -3'
miRNA:   3'- -GCGa--CGCGUACuACUUGC---------ACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 86338 0.69 0.950137
Target:  5'- uGCUGCacaaguGUGUGGUGGugGUGUuugGCACc -3'
miRNA:   3'- gCGACG------CGUACUACUugCACA---UGUGc -5'
6902 5' -50.5 NC_001875.2 + 102845 0.69 0.945659
Target:  5'- uGCaGCGgGUGAUGAcugagGCGUGUgugguucgcgACGCGg -3'
miRNA:   3'- gCGaCGCgUACUACU-----UGCACA----------UGUGC- -5'
6902 5' -50.5 NC_001875.2 + 44623 0.7 0.940925
Target:  5'- gGCUGUGUAUGAuugUGuucACcUGUGCGCGg -3'
miRNA:   3'- gCGACGCGUACU---ACu--UGcACAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 108942 0.7 0.925163
Target:  5'- gCGUUGCGCAgcagGAUGcggcCGUGUGCgauaGCGa -3'
miRNA:   3'- -GCGACGCGUa---CUACuu--GCACAUG----UGC- -5'
6902 5' -50.5 NC_001875.2 + 46381 0.71 0.900498
Target:  5'- uGCUGCGCAUGugcagcgacacgGUGuccGACGUGgauguggACACGu -3'
miRNA:   3'- gCGACGCGUAC------------UAC---UUGCACa------UGUGC- -5'
6902 5' -50.5 NC_001875.2 + 92604 0.71 0.900498
Target:  5'- cCGCUGUGCAgagUGGUGGGCGcgagcggcuUGcGCGCGu -3'
miRNA:   3'- -GCGACGCGU---ACUACUUGC---------ACaUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 116770 0.71 0.892995
Target:  5'- gCGCUGCGCGUGcaAUGAGuugaugcCGggGUACACc -3'
miRNA:   3'- -GCGACGCGUAC--UACUU-------GCa-CAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 59582 0.72 0.871781
Target:  5'- gCGCUGCaGCGUGGccGACGUGcgcgaGCACGg -3'
miRNA:   3'- -GCGACG-CGUACUacUUGCACa----UGUGC- -5'
6902 5' -50.5 NC_001875.2 + 110812 0.72 0.864
Target:  5'- aCGCcGCGCA-GGUGGACGcgcugGUGCGCc -3'
miRNA:   3'- -GCGaCGCGUaCUACUUGCa----CAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 101408 0.72 0.84776
Target:  5'- aGCUGCGCGU--UGGACGcuuUGcUGCACGa -3'
miRNA:   3'- gCGACGCGUAcuACUUGC---AC-AUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 54107 0.73 0.812779
Target:  5'- uGCUGCGCcgccGAauUGcGCGUGUACACu -3'
miRNA:   3'- gCGACGCGua--CU--ACuUGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 24782 0.73 0.803562
Target:  5'- gCGCUGUGCAUGAcagGuGCGUGaUugACGc -3'
miRNA:   3'- -GCGACGCGUACUa--CuUGCAC-AugUGC- -5'
6902 5' -50.5 NC_001875.2 + 42746 0.74 0.774933
Target:  5'- gGCgacGCGCAUGGUGAGCG-GcGCGCu -3'
miRNA:   3'- gCGa--CGCGUACUACUUGCaCaUGUGc -5'
6902 5' -50.5 NC_001875.2 + 5445 0.77 0.607886
Target:  5'- ---cGUGCAaGAUGGACGUGUGCGCa -3'
miRNA:   3'- gcgaCGCGUaCUACUUGCACAUGUGc -5'
6902 5' -50.5 NC_001875.2 + 97394 0.78 0.554887
Target:  5'- uGCUGCGCGcgcauggcguUGAUGGGCGUGaauuUGCGCa -3'
miRNA:   3'- gCGACGCGU----------ACUACUUGCAC----AUGUGc -5'
6902 5' -50.5 NC_001875.2 + 108697 0.97 0.051148
Target:  5'- aGCgguaUGCGCAUGAUGAACGUGUACACGu -3'
miRNA:   3'- gCG----ACGCGUACUACUUGCACAUGUGC- -5'
6902 5' -50.5 NC_001875.2 + 23122 1.1 0.007888
Target:  5'- cCGCUGCGCAUGAUGAACGUGUACACGu -3'
miRNA:   3'- -GCGACGCGUACUACUUGCACAUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.