miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6903 3' -59.8 NC_001875.2 + 5975 0.66 0.733463
Target:  5'- uGUGgUCGCCGAcggcaGGCCCAGcG-CGU-GCc -3'
miRNA:   3'- -CACgAGCGGCU-----CCGGGUC-CaGUAgCG- -5'
6903 3' -59.8 NC_001875.2 + 114925 0.66 0.723756
Target:  5'- -cGCUCaaacaCGAGGCCCGcgccGUCGUCGa -3'
miRNA:   3'- caCGAGcg---GCUCCGGGUc---CAGUAGCg -5'
6903 3' -59.8 NC_001875.2 + 7372 0.66 0.713972
Target:  5'- aGUGCcCGCCGGaucGGCCaCGcGGUUgcgcgacgcgGUCGCa -3'
miRNA:   3'- -CACGaGCGGCU---CCGG-GU-CCAG----------UAGCG- -5'
6903 3' -59.8 NC_001875.2 + 6515 0.66 0.713972
Target:  5'- -cGCUgGCCGccGUCCAccGGUCcucGUCGCu -3'
miRNA:   3'- caCGAgCGGCucCGGGU--CCAG---UAGCG- -5'
6903 3' -59.8 NC_001875.2 + 50024 0.66 0.711023
Target:  5'- cGUGgUCGCCGGgcggcgaggcggccGGCCCgucgcugucugaAGacauGUCGUCGCg -3'
miRNA:   3'- -CACgAGCGGCU--------------CCGGG------------UC----CAGUAGCG- -5'
6903 3' -59.8 NC_001875.2 + 128023 0.66 0.70412
Target:  5'- -gGCgugCGCCGAcgacGGCCgGuGGUCGaCGCu -3'
miRNA:   3'- caCGa--GCGGCU----CCGGgU-CCAGUaGCG- -5'
6903 3' -59.8 NC_001875.2 + 33231 0.66 0.70412
Target:  5'- -gGCUCGCCG-GGCgCCGuuUCggCGCg -3'
miRNA:   3'- caCGAGCGGCuCCG-GGUccAGuaGCG- -5'
6903 3' -59.8 NC_001875.2 + 292 0.66 0.684248
Target:  5'- aUGCUgGCC-AGGUCCAGcaccucGUCcgCGCu -3'
miRNA:   3'- cACGAgCGGcUCCGGGUC------CAGuaGCG- -5'
6903 3' -59.8 NC_001875.2 + 84013 0.67 0.674244
Target:  5'- gGUGCUCGCCacgcGGCCCAaaaagcuuGUCAgCGUa -3'
miRNA:   3'- -CACGAGCGGcu--CCGGGUc-------CAGUaGCG- -5'
6903 3' -59.8 NC_001875.2 + 33773 0.67 0.674244
Target:  5'- -aGUagUCGuuGAGGCCgGGGUgGUCuagGCg -3'
miRNA:   3'- caCG--AGCggCUCCGGgUCCAgUAG---CG- -5'
6903 3' -59.8 NC_001875.2 + 45756 0.67 0.673242
Target:  5'- -cGCggCGCCGA-GCCCgacaccgAGGUCGUCaaGCg -3'
miRNA:   3'- caCGa-GCGGCUcCGGG-------UCCAGUAG--CG- -5'
6903 3' -59.8 NC_001875.2 + 91942 0.67 0.670233
Target:  5'- uUGUUUGCC-AGGUCCGGGcuauggugcagcgCGUCGCc -3'
miRNA:   3'- cACGAGCGGcUCCGGGUCCa------------GUAGCG- -5'
6903 3' -59.8 NC_001875.2 + 55887 0.67 0.664207
Target:  5'- -cGCUgUGCCGAuGGCCgC-GGUCAgcuuuUCGCg -3'
miRNA:   3'- caCGA-GCGGCU-CCGG-GuCCAGU-----AGCG- -5'
6903 3' -59.8 NC_001875.2 + 23776 0.67 0.644067
Target:  5'- -cGCagagCGCaCGuuGCCCAGGUCgccgacguGUCGCu -3'
miRNA:   3'- caCGa---GCG-GCucCGGGUCCAG--------UAGCG- -5'
6903 3' -59.8 NC_001875.2 + 78649 0.67 0.644067
Target:  5'- -aGCUCGUCGAGGCCguGcaagCGUC-Ca -3'
miRNA:   3'- caCGAGCGGCUCCGGguCca--GUAGcG- -5'
6903 3' -59.8 NC_001875.2 + 86388 0.67 0.644067
Target:  5'- cUGCgggCGCCGAGcGCCgAGuUCGaCGCg -3'
miRNA:   3'- cACGa--GCGGCUC-CGGgUCcAGUaGCG- -5'
6903 3' -59.8 NC_001875.2 + 119231 0.67 0.643058
Target:  5'- -gGCUUGCCGuuguaccgucuucAGuaCCAGGUCGUCa- -3'
miRNA:   3'- caCGAGCGGC-------------UCcgGGUCCAGUAGcg -5'
6903 3' -59.8 NC_001875.2 + 130320 0.67 0.641041
Target:  5'- -cGUUCGa-GAGcGCCCgcacccaaaaggcaGGGUCGUCGCu -3'
miRNA:   3'- caCGAGCggCUC-CGGG--------------UCCAGUAGCG- -5'
6903 3' -59.8 NC_001875.2 + 128721 0.67 0.633979
Target:  5'- -gGCuUCGCC---GCCCAGGUCugcgCGCg -3'
miRNA:   3'- caCG-AGCGGcucCGGGUCCAGua--GCG- -5'
6903 3' -59.8 NC_001875.2 + 116617 0.67 0.633979
Target:  5'- uGUGCUCGuuGGGGCgCuuGUacUCGCg -3'
miRNA:   3'- -CACGAGCggCUCCGgGucCAguAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.