miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6903 5' -55.7 NC_001875.2 + 112828 0.66 0.884237
Target:  5'- cGCACGugCAaagcGcGUUGCGGCCUg----- -3'
miRNA:   3'- -CGUGCugGU----C-CGACGCCGGGuuauau -5'
6903 5' -55.7 NC_001875.2 + 46630 0.66 0.884237
Target:  5'- gGCGCuACCGcGCgGCGGCCCGu---- -3'
miRNA:   3'- -CGUGcUGGUcCGaCGCCGGGUuauau -5'
6903 5' -55.7 NC_001875.2 + 121384 0.66 0.884237
Target:  5'- aGUugGACUcGGCcaccUGCGuGCCCAucgaGUAUGa -3'
miRNA:   3'- -CGugCUGGuCCG----ACGC-CGGGU----UAUAU- -5'
6903 5' -55.7 NC_001875.2 + 3097 0.66 0.884237
Target:  5'- uGCACGcGCCgGGGC-GCGGCUCGcgGc- -3'
miRNA:   3'- -CGUGC-UGG-UCCGaCGCCGGGUuaUau -5'
6903 5' -55.7 NC_001875.2 + 122793 0.66 0.884237
Target:  5'- gGCGCGgaaACCGGcGCggccgGCGGCuCCAAa--- -3'
miRNA:   3'- -CGUGC---UGGUC-CGa----CGCCG-GGUUauau -5'
6903 5' -55.7 NC_001875.2 + 41826 0.66 0.877003
Target:  5'- cCGCGGCCA-GUUGCGcGUCCAGUu-- -3'
miRNA:   3'- cGUGCUGGUcCGACGC-CGGGUUAuau -5'
6903 5' -55.7 NC_001875.2 + 40925 0.66 0.877003
Target:  5'- uCACcACCgcAGGCUGCGuGCCCGu---- -3'
miRNA:   3'- cGUGcUGG--UCCGACGC-CGGGUuauau -5'
6903 5' -55.7 NC_001875.2 + 45222 0.66 0.877003
Target:  5'- -gACGGCUGGGacauuuuuUUGCGGCCCAu---- -3'
miRNA:   3'- cgUGCUGGUCC--------GACGCCGGGUuauau -5'
6903 5' -55.7 NC_001875.2 + 671 0.66 0.877003
Target:  5'- aCACG-CCGGGgUGCGGUcgCCAGUu-- -3'
miRNA:   3'- cGUGCuGGUCCgACGCCG--GGUUAuau -5'
6903 5' -55.7 NC_001875.2 + 12673 0.66 0.86954
Target:  5'- cGCGCGccgcguugGCCGGGUgugGCGGCaaAAUGUu -3'
miRNA:   3'- -CGUGC--------UGGUCCGa--CGCCGggUUAUAu -5'
6903 5' -55.7 NC_001875.2 + 36441 0.66 0.86954
Target:  5'- uGCgACG-CCGGcgcGCUGCGGCUCGAa--- -3'
miRNA:   3'- -CG-UGCuGGUC---CGACGCCGGGUUauau -5'
6903 5' -55.7 NC_001875.2 + 130121 0.66 0.864954
Target:  5'- gGCGCGACCGGuGUcgcgcccgcagcauuUGUGGCCaCAGa--- -3'
miRNA:   3'- -CGUGCUGGUC-CG---------------ACGCCGG-GUUauau -5'
6903 5' -55.7 NC_001875.2 + 50484 0.66 0.861853
Target:  5'- aCGCGGCCGGcGCgugcgcGCGGCaCCAGc--- -3'
miRNA:   3'- cGUGCUGGUC-CGa-----CGCCG-GGUUauau -5'
6903 5' -55.7 NC_001875.2 + 50712 0.66 0.861072
Target:  5'- uGUGCGugCAGGCcgGCgacuacuguuacuGGCCCAAc--- -3'
miRNA:   3'- -CGUGCugGUCCGa-CG-------------CCGGGUUauau -5'
6903 5' -55.7 NC_001875.2 + 108244 0.66 0.853948
Target:  5'- aGCGCGucaaCGGGCUGCuGGCCa------ -3'
miRNA:   3'- -CGUGCug--GUCCGACG-CCGGguuauau -5'
6903 5' -55.7 NC_001875.2 + 124471 0.67 0.837512
Target:  5'- --uCGcCCAGGCUGUacGGCUCGAUAc- -3'
miRNA:   3'- cguGCuGGUCCGACG--CCGGGUUAUau -5'
6903 5' -55.7 NC_001875.2 + 55730 0.67 0.837512
Target:  5'- aUACGGCCGagcguGGCcaUGCGGCCCu----- -3'
miRNA:   3'- cGUGCUGGU-----CCG--ACGCCGGGuuauau -5'
6903 5' -55.7 NC_001875.2 + 52023 0.67 0.837512
Target:  5'- gGCACcaccauGCCGGGCacguucaaGCGGCCCGAc--- -3'
miRNA:   3'- -CGUGc-----UGGUCCGa-------CGCCGGGUUauau -5'
6903 5' -55.7 NC_001875.2 + 83326 0.67 0.837512
Target:  5'- gGCGCGcGCCGGGCgGCGcGCCaaAAUAg- -3'
miRNA:   3'- -CGUGC-UGGUCCGaCGC-CGGg-UUAUau -5'
6903 5' -55.7 NC_001875.2 + 62584 0.67 0.820292
Target:  5'- cCACGGCUcGaGCcGCGGCCCAGc--- -3'
miRNA:   3'- cGUGCUGGuC-CGaCGCCGGGUUauau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.