miRNA display CGI


Results 1 - 20 of 229 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6911 3' -61.1 NC_001875.2 + 124179 0.66 0.69546
Target:  5'- cGGUC-CGUCGUGccguggauguagagcGCGUCgGCGUGUGUg -3'
miRNA:   3'- -CCAGaGCGGUAC---------------CGCGGgUGCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 44367 0.66 0.691554
Target:  5'- cGGUCgcgcuuuaGCCGguacacaauuuUGGgcaCGUCgGCGCGCGCg -3'
miRNA:   3'- -CCAGag------CGGU-----------ACC---GCGGgUGCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 116204 0.66 0.691554
Target:  5'- gGGUUUcuccCGCCAaGGUGCCCAgGUugGUGUc -3'
miRNA:   3'- -CCAGA----GCGGUaCCGCGGGUgCG--CGCG- -5'
6911 3' -61.1 NC_001875.2 + 79740 0.66 0.691554
Target:  5'- uGUCgCGCUcuucggcgcugGUGGCGagCAUGUGCGCa -3'
miRNA:   3'- cCAGaGCGG-----------UACCGCggGUGCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 99964 0.66 0.691554
Target:  5'- ---gUCGCCAacuugcaaccGGCGCcaguCCACGCGCGa -3'
miRNA:   3'- ccagAGCGGUa---------CCGCG----GGUGCGCGCg -5'
6911 3' -61.1 NC_001875.2 + 93673 0.66 0.691554
Target:  5'- --cCUgCGUCG-GGCGCUCGCGUucacGCGCa -3'
miRNA:   3'- ccaGA-GCGGUaCCGCGGGUGCG----CGCG- -5'
6911 3' -61.1 NC_001875.2 + 69873 0.66 0.691554
Target:  5'- aGGUCUuguuUGCCAcaucuaGGCGCgCCggucgacaaACGCgGCGCg -3'
miRNA:   3'- -CCAGA----GCGGUa-----CCGCG-GG---------UGCG-CGCG- -5'
6911 3' -61.1 NC_001875.2 + 103118 0.66 0.691554
Target:  5'- uGG-CUCGCU-UGGCGgCgGCG-GCGCc -3'
miRNA:   3'- -CCaGAGCGGuACCGCgGgUGCgCGCG- -5'
6911 3' -61.1 NC_001875.2 + 61502 0.66 0.691554
Target:  5'- ----gCGCCGgcucGGCGCCgCAgucCGCGUGCu -3'
miRNA:   3'- ccagaGCGGUa---CCGCGG-GU---GCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 22952 0.66 0.691554
Target:  5'- cGGgcggCGCCAUGuaCGCCUcCGCcGCGCu -3'
miRNA:   3'- -CCaga-GCGGUACc-GCGGGuGCG-CGCG- -5'
6911 3' -61.1 NC_001875.2 + 47516 0.66 0.685681
Target:  5'- --aCUCGCCGcuccggguaccgcaGGCGCCgcuacUAgGCGCGCa -3'
miRNA:   3'- ccaGAGCGGUa-------------CCGCGG-----GUgCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 51954 0.66 0.681758
Target:  5'- uGGg--CGCgAc-GUGCCgCACGCGCGCg -3'
miRNA:   3'- -CCagaGCGgUacCGCGG-GUGCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 31597 0.66 0.681758
Target:  5'- uGUCcggCGCCGUgccgugGGCGgaCCaCAUGCGCGUg -3'
miRNA:   3'- cCAGa--GCGGUA------CCGC--GG-GUGCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 111025 0.66 0.681758
Target:  5'- uGGUCgacaagCGCUgcGacgaCGCCCGCGCacuGCGCg -3'
miRNA:   3'- -CCAGa-----GCGGuaCc---GCGGGUGCG---CGCG- -5'
6911 3' -61.1 NC_001875.2 + 24198 0.66 0.681758
Target:  5'- --gUUUGCCcaacuGUGGCGCUgA-GCGCGCa -3'
miRNA:   3'- ccaGAGCGG-----UACCGCGGgUgCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 130788 0.66 0.681758
Target:  5'- ---gUCGCCAacguuGCGCCCaACGCuGUGCg -3'
miRNA:   3'- ccagAGCGGUac---CGCGGG-UGCG-CGCG- -5'
6911 3' -61.1 NC_001875.2 + 122693 0.66 0.681758
Target:  5'- uGG-CgugCGCCGUGGaCaCCgaaCugGCGCGCg -3'
miRNA:   3'- -CCaGa--GCGGUACC-GcGG---GugCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 83881 0.66 0.681758
Target:  5'- cGGUucCUCGUCGcugcugucGGUGUCCGCGCaCGCc -3'
miRNA:   3'- -CCA--GAGCGGUa-------CCGCGGGUGCGcGCG- -5'
6911 3' -61.1 NC_001875.2 + 98853 0.66 0.681758
Target:  5'- cGGUUUUcCCgcgaguugGUGGCGCUaAUGUGCGCg -3'
miRNA:   3'- -CCAGAGcGG--------UACCGCGGgUGCGCGCG- -5'
6911 3' -61.1 NC_001875.2 + 89516 0.66 0.681758
Target:  5'- -uUC-CGCC-UGGgGCCgCugGgCGCGCu -3'
miRNA:   3'- ccAGaGCGGuACCgCGG-GugC-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.