miRNA display CGI


Results 1 - 20 of 112 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6911 5' -46.5 NC_001875.2 + 38540 0.66 0.999909
Target:  5'- uUUGCaGCUCGu--GGCcGGGUUGCuGCGu -3'
miRNA:   3'- -AGCG-CGAGUuuuUCGuUCUAAUG-CGC- -5'
6911 5' -46.5 NC_001875.2 + 130074 0.66 0.999909
Target:  5'- uUCGCaCcCGAAAAGCAGGGUcgcCGCu -3'
miRNA:   3'- -AGCGcGaGUUUUUCGUUCUAau-GCGc -5'
6911 5' -46.5 NC_001875.2 + 36325 0.66 0.999909
Target:  5'- cCGCGCU---GGGGCu--GUUGCGCGu -3'
miRNA:   3'- aGCGCGAguuUUUCGuucUAAUGCGC- -5'
6911 5' -46.5 NC_001875.2 + 100102 0.66 0.999909
Target:  5'- cUCGCGCUCAAAcgccGCGGGccaacuuCGCc -3'
miRNA:   3'- -AGCGCGAGUUUuu--CGUUCuaau---GCGc -5'
6911 5' -46.5 NC_001875.2 + 99662 0.66 0.999909
Target:  5'- cUGCGUggCGGAGAGCAAG-UUccaguugagcaGCGCGu -3'
miRNA:   3'- aGCGCGa-GUUUUUCGUUCuAA-----------UGCGC- -5'
6911 5' -46.5 NC_001875.2 + 61964 0.66 0.999909
Target:  5'- gCGCGCcUAGAuguGGCAaacaAGAccUGCGCGg -3'
miRNA:   3'- aGCGCGaGUUUu--UCGU----UCUa-AUGCGC- -5'
6911 5' -46.5 NC_001875.2 + 66629 0.66 0.999909
Target:  5'- gCGCGCUU---GAGCAacAGcGUUACGUa -3'
miRNA:   3'- aGCGCGAGuuuUUCGU--UC-UAAUGCGc -5'
6911 5' -46.5 NC_001875.2 + 118308 0.66 0.999901
Target:  5'- gCGCGCUUgcaacaacggcuGCAAGcgUGCGUGc -3'
miRNA:   3'- aGCGCGAGuuuuu-------CGUUCuaAUGCGC- -5'
6911 5' -46.5 NC_001875.2 + 74125 0.66 0.99988
Target:  5'- gCGUGUUCGccuAGAGCuGGAguucgaggGCGCGg -3'
miRNA:   3'- aGCGCGAGUu--UUUCGuUCUaa------UGCGC- -5'
6911 5' -46.5 NC_001875.2 + 130328 0.66 0.99988
Target:  5'- -aGCGCccgcaccCAAAAGGCAGGGUcguCGCu -3'
miRNA:   3'- agCGCGa------GUUUUUCGUUCUAau-GCGc -5'
6911 5' -46.5 NC_001875.2 + 16261 0.66 0.99988
Target:  5'- uUUGgGCUCAAAAuuGGCAA----ACGCGu -3'
miRNA:   3'- -AGCgCGAGUUUU--UCGUUcuaaUGCGC- -5'
6911 5' -46.5 NC_001875.2 + 44654 0.66 0.99988
Target:  5'- gUCGCGCgUCAAGAucucGCcAGccaGCGCGg -3'
miRNA:   3'- -AGCGCG-AGUUUUu---CGuUCuaaUGCGC- -5'
6911 5' -46.5 NC_001875.2 + 90443 0.66 0.99988
Target:  5'- aCGCGCgCGcAGAGGCGucGGUgggcgGCGCGu -3'
miRNA:   3'- aGCGCGaGU-UUUUCGUu-CUAa----UGCGC- -5'
6911 5' -46.5 NC_001875.2 + 35407 0.66 0.999876
Target:  5'- gCGCGCgagCGAcgccgacAAGcGCGAGuUUGCGCGc -3'
miRNA:   3'- aGCGCGa--GUU-------UUU-CGUUCuAAUGCGC- -5'
6911 5' -46.5 NC_001875.2 + 11056 0.66 0.999843
Target:  5'- aCGCGCgCAAAcuGCAGcaGUUugGCGu -3'
miRNA:   3'- aGCGCGaGUUUuuCGUUc-UAAugCGC- -5'
6911 5' -46.5 NC_001875.2 + 85966 0.66 0.999843
Target:  5'- gUUGCGCUCAAAgucGAGCuuGA--GCGUu -3'
miRNA:   3'- -AGCGCGAGUUU---UUCGuuCUaaUGCGc -5'
6911 5' -46.5 NC_001875.2 + 95768 0.66 0.999843
Target:  5'- -aGCGCgUCuuGuuGCAGGAaccgUUGCGCa -3'
miRNA:   3'- agCGCG-AGuuUuuCGUUCU----AAUGCGc -5'
6911 5' -46.5 NC_001875.2 + 124713 0.66 0.999843
Target:  5'- aCGCGC-Cu---GGCAAGcg-GCGCGu -3'
miRNA:   3'- aGCGCGaGuuuuUCGUUCuaaUGCGC- -5'
6911 5' -46.5 NC_001875.2 + 83621 0.66 0.999796
Target:  5'- gCGCGUUCcgcgccAGCAAGGacUACGCa -3'
miRNA:   3'- aGCGCGAGuuuu--UCGUUCUa-AUGCGc -5'
6911 5' -46.5 NC_001875.2 + 52107 0.66 0.999796
Target:  5'- -aGCGC-CGAAGAGCGcGAcauucUGCGCa -3'
miRNA:   3'- agCGCGaGUUUUUCGUuCUa----AUGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.