miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6912 3' -60.7 NC_001875.2 + 45594 0.66 0.61063
Target:  5'- -cCaGCGGGCCCGaCUCcgGCgCGCAGCa- -3'
miRNA:   3'- aaGcCGCUCGGGC-GAG--UG-GUGUCGau -5'
6912 3' -60.7 NC_001875.2 + 27341 0.66 0.61063
Target:  5'- -aCGGCGuuucGCCgGCUCGCaucauGCGGCUc -3'
miRNA:   3'- aaGCCGCu---CGGgCGAGUGg----UGUCGAu -5'
6912 3' -60.7 NC_001875.2 + 6229 0.66 0.61063
Target:  5'- gUCGGCGAcacGCCCagccGCUCcACCAUguAGCg- -3'
miRNA:   3'- aAGCCGCU---CGGG----CGAG-UGGUG--UCGau -5'
6912 3' -60.7 NC_001875.2 + 43452 0.66 0.5902
Target:  5'- cUCGGUGAGgUC-CUCGCUGCGGUUGa -3'
miRNA:   3'- aAGCCGCUCgGGcGAGUGGUGUCGAU- -5'
6912 3' -60.7 NC_001875.2 + 94737 0.66 0.5902
Target:  5'- -gCGGCGccgcGCCCGCaCACCcacGCGGCg- -3'
miRNA:   3'- aaGCCGCu---CGGGCGaGUGG---UGUCGau -5'
6912 3' -60.7 NC_001875.2 + 124482 0.66 0.580027
Target:  5'- -cCGGCGGGCaCUGC--ACCGCAGgCUAc -3'
miRNA:   3'- aaGCCGCUCG-GGCGagUGGUGUC-GAU- -5'
6912 3' -60.7 NC_001875.2 + 122136 0.66 0.580027
Target:  5'- -gCGGCGcGGCCgGCgcgCACgACGGCg- -3'
miRNA:   3'- aaGCCGC-UCGGgCGa--GUGgUGUCGau -5'
6912 3' -60.7 NC_001875.2 + 114759 0.67 0.569892
Target:  5'- -gCGGCuuGCCCGCcugaccagcuUCACCagcggGCAGCUGc -3'
miRNA:   3'- aaGCCGcuCGGGCG----------AGUGG-----UGUCGAU- -5'
6912 3' -60.7 NC_001875.2 + 95155 0.67 0.569892
Target:  5'- gUUGGCGuucagaaacuccAGCUCGUUCACCACcauucGCUGg -3'
miRNA:   3'- aAGCCGC------------UCGGGCGAGUGGUGu----CGAU- -5'
6912 3' -60.7 NC_001875.2 + 71926 0.67 0.569892
Target:  5'- gUCGGCGAGCgCCuugaccgcgcGCUCcGCgCGCAGCc- -3'
miRNA:   3'- aAGCCGCUCG-GG----------CGAG-UG-GUGUCGau -5'
6912 3' -60.7 NC_001875.2 + 74152 0.67 0.569892
Target:  5'- --gGGCGcggcGCCCGC-CGCCGcCAGCUu -3'
miRNA:   3'- aagCCGCu---CGGGCGaGUGGU-GUCGAu -5'
6912 3' -60.7 NC_001875.2 + 52458 0.67 0.5598
Target:  5'- gUCGGCGAcCCCGaaCugaCGCAGCUAa -3'
miRNA:   3'- aAGCCGCUcGGGCgaGug-GUGUCGAU- -5'
6912 3' -60.7 NC_001875.2 + 93835 0.67 0.5598
Target:  5'- aUgGGCGuGCCCGUaaugCACCaACGGUUGu -3'
miRNA:   3'- aAgCCGCuCGGGCGa---GUGG-UGUCGAU- -5'
6912 3' -60.7 NC_001875.2 + 68117 0.67 0.549759
Target:  5'- -cCGGCGAagcGCCCGCcgUCGCCGCGa--- -3'
miRNA:   3'- aaGCCGCU---CGGGCG--AGUGGUGUcgau -5'
6912 3' -60.7 NC_001875.2 + 3830 0.67 0.539774
Target:  5'- gUCGGCGcacGCCgGCgcgGCCGCAGCc- -3'
miRNA:   3'- aAGCCGCu--CGGgCGag-UGGUGUCGau -5'
6912 3' -60.7 NC_001875.2 + 51323 0.67 0.529852
Target:  5'- gUCGGCcAGCUCGCacgCGCCAUGGUg- -3'
miRNA:   3'- aAGCCGcUCGGGCGa--GUGGUGUCGau -5'
6912 3' -60.7 NC_001875.2 + 65798 0.67 0.519997
Target:  5'- gUCGGCGcgcgguGCCUGCgcggCGCCaagcgcuuGCAGCUGc -3'
miRNA:   3'- aAGCCGCu-----CGGGCGa---GUGG--------UGUCGAU- -5'
6912 3' -60.7 NC_001875.2 + 21328 0.68 0.510215
Target:  5'- --aGGUG-GCCCGCggcCACCugGGCg- -3'
miRNA:   3'- aagCCGCuCGGGCGa--GUGGugUCGau -5'
6912 3' -60.7 NC_001875.2 + 85863 0.68 0.490888
Target:  5'- -aCGGCGAGUUCGC-CGCaGCGGCg- -3'
miRNA:   3'- aaGCCGCUCGGGCGaGUGgUGUCGau -5'
6912 3' -60.7 NC_001875.2 + 117356 0.68 0.471908
Target:  5'- -cCGGCGGGCCgGCUgGCCGuCGGg-- -3'
miRNA:   3'- aaGCCGCUCGGgCGAgUGGU-GUCgau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.